Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq286 109 1e-18
seq50 105 1e-17
seq1723 104 4e-17
seq351 104 4e-17
seq1209 91.5 3e-13
>seq286
Length=43880
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || |||||||| || || || ||||||
Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||| | || || || || || || | || |||||||||||| || || ||||||
Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCATT 23868
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || |||||||| || || || ||||||
Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||| | || || || || || || | || |||||||||||| || || ||||||
Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| || || || ||||||
Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCATT 24999
Score = 96.9 bits (106), Expect = 6e-15
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| |||||||| || || || ||||||
Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCC 24514
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||||||||| ||||| || || ||
Sbjct 24513 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 24454
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 24453 AGTCTTAACAAAAATTTGCATT 24432
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 23046 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 22987
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || || ||||||| | ||| ||||||| || |||||||| || ||
Sbjct 22986 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 22927
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || || || ||||||||||||
Sbjct 22926 CAGAGTTTTCACAAATATCTGCATT 22902
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||||| || || ||||| || ||||| ||||||||||| |
Sbjct 25418 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 25359
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||| | || || | || ||| |||||||| ||||||||||| || || |||
Sbjct 25358 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTTAGG 25299
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 25298 GTCTTAACAAAAATTTGCATT 25278
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| |||||||| || || || ||||||
Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCC 24229
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || ||| |||||||||||||| ||||| || || ||
Sbjct 24228 TTTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAAG 24169
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 24168 AGTCTTAACAAAAATTTGCATT 24147
>seq50
Length=223599
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | |||||| || || || |||||||||||||| || ||||| ||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || ||||||||||||| || ||| ||||| | || || |||||||| ||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464
|| ||||| |||||||||||||| ||
Sbjct 2212 AGTGTCTTCACGAATATCTGCATAAT 2237
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 1381 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1440
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || |||| || ||||||||||| ||||| |||||||| || |
Sbjct 1441 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 1500
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| || || || ||||||||
Sbjct 1501 GTTTTCACAAAAATCTGCAT 1520
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 810 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 869
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 870 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 929
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || || || |||||||||
Sbjct 930 GTTTTCACAAAAATCTGCATT 950
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 1096 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1155
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 1156 TTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 1215
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || || || |||||||||
Sbjct 1216 GTTTTCACAAAAATCTGCATT 1236
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 1667 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1726
Query 68382 TTGACGGCCTCGAT-GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 1727 TTCACATTTTCAATNNGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 1786
Query 68441 GGTCTTGACGAATATCTGCAT 68461
|| || || || ||||||||
Sbjct 1787 TGTTTTCACAAAAATCTGCAT 1807
>seq1723
Length=770
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || || ||||| || || || ||||||
Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||| | || || || || || || | || |||||||||||| || || ||||||
Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCATT 502
Score = 89.7 bits (98), Expect = 9e-13
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || ||||| | | ||||| || |||||||| || || || |||||||| ||
Sbjct 364 CTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT-TT 306
Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
|||||| || || || || || | || |||||||||||| || || |||||||| |
Sbjct 305 TGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAG 246
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||| || || || ||||||
Sbjct 245 TAAGAGTCTTAACAAAAATTTGCATT 220
>seq351
Length=21764
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || || ||||| || || || ||||||
Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||| | || || || || || || | || |||||||||||| || || ||||||
Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 19073 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 19014
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || || ||||||| | ||| ||||||| || |||||||| || ||
Sbjct 19013 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 18954
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || ||||| ||||||||||||
Sbjct 18953 CAGAGTTTTGACAAATATCTGCATT 18929
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || || ||||| || || || |||||
Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||| | || || || || || || | || |||||||||||| || || ||||||
Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| || || || ||||||
Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCATT 21588
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || | | ||| || || |||||||| |||||||| || || || ||
Sbjct 20318 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 20259
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || || || || || | || ||| |||||||| ||||||||||| || ||
Sbjct 20258 CCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGT 20199
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
||| ||||| ||||| || ||||||
Sbjct 20198 GAGAGTCTTAACGAAAATTTGCATT 20174
Score = 89.7 bits (98), Expect = 9e-13
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || ||||| | | ||||| || |||||||| || || || |||||||| ||
Sbjct 20602 CTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT-TT 20544
Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
|||||| || || || || || | || |||||||||||| || || |||||||| |
Sbjct 20543 TGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAG 20484
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||| || || || ||||||
Sbjct 20483 TAAGAGTCTTAACAAAAATTTGCATT 20458
>seq1209
Length=1128
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 319 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 260
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 259 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 200
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| || || || ||||||||
Sbjct 199 GTTTTCACAAAAATCTGCAT 180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921530341442520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |