Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq351 89.7 4e-13
seq286 82.4 6e-11
>seq351
Length=21764
Score = 89.7 bits (98), Expect = 4e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300
||||||| | || || |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 19403 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 19344
Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360
||||| | ||||| || || | | || || || | || | |||||| || ||||
Sbjct 19343 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 19284
Query 114361 GAGTTTTTACAAAAATCTGCAT 114382
||||| ||||| ||||||||
Sbjct 19283 ACGTTTTCACAAATATCTGCAT 19262
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299
|||||||| | || ||||| ||||| || || ||||| || ||||| || ||| ||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359
|| | | ||||| ||||| | || ||| || |||| || | ||||| || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382
|||||||| ||||| ||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930
>seq286
Length=43880
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299
|||||||| | || ||||| ||||| || || ||||| || ||||| || ||| ||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359
|| | | ||||| ||||| | || ||| || |||| || | ||||| || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382
|||||||| ||||| ||||||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCAT 22903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420093482979492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |