Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq351 89.7 4e-13 seq286 82.4 6e-11 >seq351 Length=21764 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| ||||| ||||||||||||||||| |||||| Sbjct 19403 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 19344 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 19343 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 19284 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 19283 ACGTTTTCACAAATATCTGCAT 19262 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930 >seq286 Length=43880 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 22925 AGAGTTTTCACAAATATCTGCAT 22903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420093482979492