Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq351 102 2e-16 seq286 98.7 2e-15 seq45 95.1 3e-14 >seq351 Length=21764 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCATT 18929 >seq286 Length=43880 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 22925 AGAGTTTTCACAAATATCTGCATT 22902 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || |||||||||||||| |||| || ||||| || ||||| || || ||| Sbjct 25418 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 25362 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| || || | || ||| | ||| ||||| | |||||| || |||||||| Sbjct 25361 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTT 25302 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 25301 AGGGTCTTAACAAAAATTTGCATT 25278 >seq45 Length=238280 Score = 95.1 bits (104), Expect = 3e-14 Identities = 194/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 ||||| || || ||| | ||| ||||||||||||||| || || ||| || || Sbjct 34376 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 34435 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | || | ||||| | |||| ||||||| |||||||| || ||| || ||| Sbjct 34436 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 34495 Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTG 325544 ||| |||| | ||| || || ||||| || |||| | |||||||||||| || Sbjct 34496 ACGGAACCAGCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATG 34553 Query 325545 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 325604 | | ||||| ||||| ||| || || |||||||| | ||| |||||||| || | Sbjct 34554 TGAACAAAACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCT 34613 Query 325605 CCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647 | || | | || ||||||||| | || ||||||||||| Sbjct 34614 CGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 34656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179533621452898