Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq351 102 2e-16
seq286 98.7 2e-15
seq45 95.1 3e-14
>seq351
Length=21764
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCATT 18929
>seq286
Length=43880
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATT 22902
Score = 89.7 bits (98), Expect = 1e-12
Identities = 107/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || |||||||||||||| |||| || ||||| || ||||| || || |||
Sbjct 25418 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 25362
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| || || | || ||| | ||| ||||| | |||||| || ||||||||
Sbjct 25361 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTT 25302
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || || || ||||||
Sbjct 25301 AGGGTCTTAACAAAAATTTGCATT 25278
>seq45
Length=238280
Score = 95.1 bits (104), Expect = 3e-14
Identities = 194/284 (68%), Gaps = 6/284 (2%)
Strand=Plus/Plus
Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426
||||| || || ||| | ||| ||||||||||||||| || || ||| || ||
Sbjct 34376 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 34435
Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486
| || | ||||| | |||| ||||||| |||||||| || ||| || |||
Sbjct 34436 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 34495
Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTG 325544
||| |||| | ||| || || ||||| || |||| | |||||||||||| ||
Sbjct 34496 ACGGAACCAGCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATG 34553
Query 325545 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 325604
| | ||||| ||||| ||| || || |||||||| | ||| |||||||| || |
Sbjct 34554 TGAACAAAACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCT 34613
Query 325605 CCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647
| || | | || ||||||||| | || |||||||||||
Sbjct 34614 CGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 34656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179533621452898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |