Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq45 100 6e-16 >seq45 Length=238280 Score = 100 bits (110), Expect = 6e-16 Identities = 226/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | ||||| || Sbjct 34325 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 34384 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| | ||| ||||||||||||||| || || ||| || || | || | Sbjct 34385 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 34444 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| ||||||| |||||||| || ||| || |||||| |||| Sbjct 34445 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 34504 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTGAATATATCA 297674 | ||| || || ||||| || |||| | |||||||||||| || | | | Sbjct 34505 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATGTGAACAAAA 34562 Query 297675 CTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CG 297733 |||| ||||| ||| || || |||||||| | ||| |||||||| || || || | Sbjct 34563 CTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCA 34622 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | || ||||||||| | || ||||||||||| Sbjct 34623 TGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 34656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102767081975850