Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 9e-17
seq107 96.9 4e-15
seq20 96.9 4e-15
seq10 96.9 4e-15
>seq3
Length=622169
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 95945 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 95886
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||
Sbjct 95885 ACTCACCACTATACTACCGAGGAT 95862
>seq107
Length=145534
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 71561 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71502
Query 57067 TACTACCGAGGATTGA 57082
|||||||||||| |||
Sbjct 71501 TACTACCGAGGACTGA 71486
>seq20
Length=313988
Score = 96.9 bits (106), Expect = 4e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045
|||| | ||| || ||| |||| |||| | |||||||||| |||| ||||||||||
Sbjct 266571 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 266630
Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||| |||||||||||||||||||||||||
Sbjct 266631 AGGCGGGAATACTCACCACTATACTACCGAGGA 266663
>seq10
Length=390958
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 50791 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 50732
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 50731 TACTACCGAGGAT 50719
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 51488 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 51429
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 51428 TACTACCGAGGAT 51416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543158539831440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |