Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq22 91.5 1e-13 >seq22 Length=309055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 ||| | || ||| ||||| | | |||||||| |||||||| | ||||| || Sbjct 282449 CTGTTCAACGCGATCGAGACCATTCCGTGCGTGAAGAAAAAGGCAGACTGGGCTTTGCGC 282390 Query 52365 TGGATCGA-GAGCGACAC-CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCG 52422 ||||||| || || || ||||| || ||| || |||| || ||||| || | Sbjct 282389 TGGATCGGTGACCGTCAGTCGCCATTTTG--CGAACGTTTGGTCGCGTTCGCAGCTGTTG 282332 Query 52423 AGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAA 52482 | ||| | || |||||||||||||| || | || || | | |||| | ||| | | Sbjct 282331 AAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGA 282272 Query 52483 TGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525 ||||||| ||||||||||||||||| |||| || || ||||| Sbjct 282271 TGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGA 282229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496212829589520