Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1723 111 1e-19 seq351 111 1e-19 seq286 111 1e-19 seq3254 109 4e-19 seq542 95.1 9e-15 >seq1723 Length=770 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| |||||||||||||||| || ||||||||| || || || | Sbjct 369 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 310 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||||| ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 309 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 250 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 249 CCAGTAAGAGTCTTAACAAAAATTTGCAT 221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || |||||||| || || || | Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCAT 503 >seq351 Length=21764 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| |||||||||||||||| || ||||||||| || || || | Sbjct 20607 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 20548 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||||| ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 20547 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20488 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 20487 CCAGTAAGAGTCTTAACAAAAATTTGCAT 20459 Score = 107 bits (118), Expect = 1e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| | |||||||| || || || ||||||||||||||| || Sbjct 21455 AATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 21396 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||||||| | ||||| ||||| |||||| |||||||| || ||||| Sbjct 21395 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 21336 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 21335 CCGGTAAGAGTCTTAACAAAAATTTGCAT 21307 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||||||||| || ||||| | | Sbjct 21163 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21104 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 21103 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 21044 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 21043 GTCTTAACAAAAATTTGCAT 21024 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||| || || || |||||||| | Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 20760 GTCTTAACGAAAATTTGCAT 20741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| || || || ||||||||||||||| || ||||| Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||| ||| ||||||| ||||| ||| || || || || |||||||| || || Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||||||||| Sbjct 20197 AGAGTCTTAACGAAAATTTGCAT 20175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || |||||||| || || || | Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCAT 19896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || |||||||| || || || Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCAT 21589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| || ||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111 |||||||| || |||||| ||||| ||||| ||| |||||||||||| |||| || Sbjct 19386 CGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTTTTTACATTTTCAATT 19327 Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171 ||||| || || || | ||||| ||||| ||||||| ||||| ||||| || Sbjct 19326 GTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAACGTTTTCACAAATATC 19267 Query 15172 TGCAT 15176 ||||| Sbjct 19266 TGCAT 19262 >seq286 Length=43880 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| | |||||||| ||||| || ||||||||||||||| || Sbjct 24866 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 24807 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||||||| | ||||| ||||| |||||| |||||||| || ||||| Sbjct 24806 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 24747 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 24746 CCGGTAAGAGTCTTAACAAAAATTTGCAT 24718 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||||||||| || ||||||| | Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24513 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 24512 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24453 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 24452 GTCTTAACAAAAATTTGCAT 24433 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||| || || || |||||||| | Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 238 GTCTTAACGAAAATTTGCAT 219 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||||||||| || ||||||| | Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24228 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| ||| || || ||||| || ||||| || || ||| Sbjct 24227 TTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24168 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 24167 GTCTTAACAAAAATTTGCAT 24148 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || ||||||||| || || || | Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCAT 25000 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || ||||||||| || || || | Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCAT 23869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| ||||| || ||||| || Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900 >seq3254 Length=450 Score = 109 bits (120), Expect = 4e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || ||||||||||||||| || ||||||| | Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 392 GTCTTAACGAAAATTTGCAT 411 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 ||||| ||||| || ||||||||||||||| || ||||||| ||||||| | ||| Sbjct 1 AAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCT 60 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 || ||||| |||||| |||||||| || ||||| || || ||||| || || ||| Sbjct 61 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAA 120 Query 15169 ATTTGCAT 15176 |||||||| Sbjct 121 ATTTGCAT 128 >seq542 Length=5403 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||| || || || |||||||| | Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 238 GTCTTAACGAAAATTTGCAT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357357193481435