Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1723 111 1e-19
seq351 111 1e-19
seq286 111 1e-19
seq3254 109 4e-19
seq542 95.1 9e-15
>seq1723
Length=770
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| |||||||||||||||| || ||||||||| || || || |
Sbjct 369 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 310
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||||| ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 309 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 250
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 249 CCAGTAAGAGTCTTAACAAAAATTTGCAT 221
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || |||||||| || || || |
Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || |||||||||||
Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCAT 503
>seq351
Length=21764
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| |||||||||||||||| || ||||||||| || || || |
Sbjct 20607 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 20548
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||||| ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 20547 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20488
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 20487 CCAGTAAGAGTCTTAACAAAAATTTGCAT 20459
Score = 107 bits (118), Expect = 1e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| | |||||||| || || || ||||||||||||||| ||
Sbjct 21455 AATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 21396
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||||||| | ||||| ||||| |||||| |||||||| || |||||
Sbjct 21395 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 21336
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 21335 CCGGTAAGAGTCTTAACAAAAATTTGCAT 21307
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||||||||| || ||||| | |
Sbjct 21163 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21104
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 21103 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 21044
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 21043 GTCTTAACAAAAATTTGCAT 21024
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||| || || || |||||||| |
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 20760 GTCTTAACGAAAATTTGCAT 20741
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| || || || ||||||||||||||| || |||||
Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||| ||| ||||||| ||||| ||| || || || || |||||||| || ||
Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
||||| || || |||||||||||
Sbjct 20197 AGAGTCTTAACGAAAATTTGCAT 20175
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || |||||||| || || || |
Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || |||||||||||
Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCAT 19896
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || |||||||| || || ||
Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||||||||||||
Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCAT 21589
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|||||||| ||||| || |||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111
|||||||| || |||||| ||||| ||||| ||| |||||||||||| |||| ||
Sbjct 19386 CGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTTTTTACATTTTCAATT 19327
Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171
||||| || || || | ||||| ||||| ||||||| ||||| ||||| ||
Sbjct 19326 GTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAACGTTTTCACAAATATC 19267
Query 15172 TGCAT 15176
|||||
Sbjct 19266 TGCAT 19262
>seq286
Length=43880
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| | |||||||| ||||| || ||||||||||||||| ||
Sbjct 24866 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 24807
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||||||| | ||||| ||||| |||||| |||||||| || |||||
Sbjct 24806 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 24747
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 24746 CCGGTAAGAGTCTTAACAAAAATTTGCAT 24718
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||||||||| || ||||||| |
Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24513
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 24512 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24453
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 24452 GTCTTAACAAAAATTTGCAT 24433
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||| || || || |||||||| |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 238 GTCTTAACGAAAATTTGCAT 219
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||||||||| || ||||||| |
Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24228
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| ||| || || ||||| || ||||| || || |||
Sbjct 24227 TTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24168
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 24167 GTCTTAACAAAAATTTGCAT 24148
Score = 93.3 bits (102), Expect = 3e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || ||||||||| || || || |
Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||||||||||||
Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCAT 25000
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || ||||||||| || || || |
Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || |||||||||||
Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCAT 23869
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|||||||| ||||| || ||||| ||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900
>seq3254
Length=450
Score = 109 bits (120), Expect = 4e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || ||||||||||||||| || ||||||| |
Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 392 GTCTTAACGAAAATTTGCAT 411
Score = 100 bits (110), Expect = 2e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108
||||| ||||| || ||||||||||||||| || ||||||| ||||||| | |||
Sbjct 1 AAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCT 60
Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168
|| ||||| |||||| |||||||| || ||||| || || ||||| || || |||
Sbjct 61 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAA 120
Query 15169 ATTTGCAT 15176
||||||||
Sbjct 121 ATTTGCAT 128
>seq542
Length=5403
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||| || || || |||||||| |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 238 GTCTTAACGAAAATTTGCAT 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357357193481435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |