Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq67 145 1e-29
>seq67
Length=189510
Score = 145 bits (160), Expect = 1e-29
Identities = 170/227 (75%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899
|||||||| ||||||||||| || |||| || ||| || |||||| ||||||||| ||
Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462
Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGG 203958
|| || || ||||||| ||| ||||| | ||||| || | || ||| || | || ||
Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATA-ATTCGG 41403
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018
||||| |||||||| |||| |||||| |||||| ||||| | ||| || |||||
Sbjct 41402 CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGC 41343
Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065
||| | || | | || || ||||| ||||| ||||||||| |||
Sbjct 41342 CATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 41296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795075773934960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |