Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1209 87.8 1e-12 seq50 87.8 1e-12 >seq1209 Length=1128 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| |||||||||||||||||||||||||| || ||||| || |||| Sbjct 178 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 121 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 120 ATAACGTACGACCATCTTCCAGTTGTTTCCC 90 >seq50 Length=223599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||||||||||||||| || ||||| || |||| Sbjct 1237 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 1294 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 1295 ATAACGTACGACCATCTTCCAGTTGTTTCCC 1325 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| |||||||||||||||||||||||||| || ||||| || |||| Sbjct 1522 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 1579 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 1580 ATAACGTACGACCATCTTCCAGTTGTTTCCC 1610 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||| ||||||||||| || ||||| || |||| Sbjct 951 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 1008 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 1009 ATAACGTACGACCATCTTCCAGTTGTTTCCC 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347335769566103