Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 87.8 1e-12
seq50 87.8 1e-12
>seq1209
Length=1128
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || ||||| |||||||||||||||||||||||||| || ||||| || ||||
Sbjct 178 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 121
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 120 ATAACGTACGACCATCTTCCAGTTGTTTCCC 90
>seq50
Length=223599
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||||||||||||||| || ||||| || ||||
Sbjct 1237 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 1294
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 1295 ATAACGTACGACCATCTTCCAGTTGTTTCCC 1325
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || ||||| |||||||||||||||||||||||||| || ||||| || ||||
Sbjct 1522 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 1579
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 1580 ATAACGTACGACCATCTTCCAGTTGTTTCCC 1610
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/91 (81%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||| ||||||||||| || ||||| || ||||
Sbjct 951 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 1008
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 1009 ATAACGTACGACCATCTTCCAGTTGTTTCCC 1039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347335769566103
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |