Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq22 187 2e-42
>seq22
Length=309055
Score = 187 bits (206), Expect = 2e-42
Identities = 271/377 (72%), Gaps = 18/377 (5%)
Strand=Plus/Plus
Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973
|| ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| |
Sbjct 282224 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 282283
Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033
|||| | ||| || || | ||||| ||||| |||||||| | ||| || || || ||||
Sbjct 282284 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGA 282343
Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089
| || |||| || |||| || |||| | || || |||||||||||| |||
Sbjct 282344 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 282399
Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149
|| || ||||||| || |||||||| || || ||||| ||||| |||| | | | |
Sbjct 282400 CAGTCTGCCTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGA--AAATCAC 282457
Query 133150 TCTTCCGAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTGTA 133204
|| | ||| ||| | |||||||||||| |||| | |||||||| || || |
Sbjct 282458 GCTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATGGA 282514
Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264
| || || ||||| ||||| ||||| || || | || |||||| || || | |||||
Sbjct 282515 CATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTT 282574
Query 133265 GAGCGAAACGCTCGACC 133281
| | || ||||| |||
Sbjct 282575 GCGAAAATCGCTCCACC 282591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500122838989440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |