Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq20 150 7e-31
seq1723 127 8e-24
seq351 127 8e-24
seq112 125 3e-23
seq286 122 3e-22
seq50 120 1e-21
seq3254 104 9e-17
seq1209 102 3e-16
seq542 95.1 5e-14
>seq20
Length=313988
Score = 150 bits (166), Expect = 7e-31
Identities = 271/393 (69%), Gaps = 5/393 (1%)
Strand=Plus/Minus
Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264
|||||||| | || ||||| || | || | ||| | || |||||||| |||||
Sbjct 302452 ATTCAAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATG 302393
Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323
|| ||| | || ||||| ||||| || ||| ||| | || | |||| |||||
Sbjct 302392 GTG-TTAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGC 302334
Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383
|||||||||||||| || ||||| || ||| | || || || || || ||||| || ||
Sbjct 302333 CGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGG 302274
Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443
| ||| ||||||| |||||| | || || || || ||||| ||||| ||||| | ||
Sbjct 302273 AACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGC 302214
Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503
|||||||| | | ||| | | ||| |||| || | ||||||| ||||
Sbjct 302213 TTATGGACTTG---ATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGG 302157
Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563
||| || ||| |||| ||| | | | || |||||||| | ||||| || ||| |
Sbjct 302156 TGGTGGTACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTC 302097
Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
||| |||||| |||||| | || ||||| ||
Sbjct 302096 TACCGCTGGTGACACTCATTTGGGTGGTGAGGA 302064
>seq1723
Length=770
Score = 127 bits (140), Expect = 8e-24
Identities = 109/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 502 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 561
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| ||||||||||||||| || ||||||||||| |||||
Sbjct 562 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 621
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 622 ACAACGTTTGATTTT 636
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 220 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 279
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 280 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 339
Query 391169 ACAACGTTTAATTTT 391183
||| ||||| || ||
Sbjct 340 ACAGCGTTTGATATT 354
>seq351
Length=21764
Score = 127 bits (140), Expect = 8e-24
Identities = 109/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 19895 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19954
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| ||||||||||||||| || ||||||||||| |||||
Sbjct 19955 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 20014
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 20015 ACAACGTTTGATTTT 20029
Score = 118 bits (130), Expect = 4e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 21588 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 21647
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| |||||| |||||||| || ||||||||||| |||||
Sbjct 21648 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 21707
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 21708 ACAACGTTTGATTTT 21722
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 20174 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATC 20233
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 20234 TGATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 20293
Query 391169 ACAACGTTTAATTTT 391183
|||||||| |||||
Sbjct 20294 GCAACGTTTGATTTT 20308
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 20458 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20517
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 20518 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20577
Query 391169 ACAACGTTTAATTTT 391183
||| ||||| || ||
Sbjct 20578 ACAGCGTTTGATATT 20592
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || ||||| |||||||| ||||| |||||||| || || ||| | ||
Sbjct 18929 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 18988
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | |||||| | | || |||||||| ||||| || |||||||| || |||||
Sbjct 18989 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 19048
Query 391169 ACAACGTTTAATTTT 391183
||||||| | |||||
Sbjct 19049 ACAACGTCTGATTTT 19063
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 20740 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 20799
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 20800 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 20859
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 20860 GCAACGTCTGATTTT 20874
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 21306 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 21365
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 21366 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 21425
Query 391169 ACAACGTTTAATTTT 391183
|||||||| |||||
Sbjct 21426 GCAACGTTTGATTTT 21440
Score = 91.5 bits (100), Expect = 6e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 21023 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 21082
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 21083 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 21142
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 21143 GCAACGTCTGATTTT 21157
>seq112
Length=139861
Score = 125 bits (138), Expect = 3e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278
||| ||||||| ||| || |||| |||||||||||| | |||||| | |||||
Sbjct 50965 TAACGGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAAT 51024
Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338
|||||||| || || ||| | || ||| | |||| || | || |||||
Sbjct 51025 GAAAGAAATTGCCGAGGCTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCC 51084
Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398
||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||| |
Sbjct 51085 AGCTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCT 51144
Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425
|||||| ||||||| || || |||||
Sbjct 51145 TAATGTTGTTCGAATCATCAACGAACC 51171
>seq286
Length=43880
Score = 122 bits (134), Expect = 3e-22
Identities = 108/135 (80%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 23868 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 23927
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| ||||||||||||||| || |||||||| || |||||
Sbjct 23928 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 23987
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 23988 ACAACGTTTGATTTT 24002
Score = 118 bits (130), Expect = 4e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 24999 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 25058
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| ||||||||||||||| || |||||||| || |||||
Sbjct 25059 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 25118
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 25119 ACAACGTTTGATTTT 25133
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || ||||| |||||||| ||||| |||||||| || || ||| | ||
Sbjct 22902 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 22961
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | |||||| | | || |||||||| ||||| || |||||||| || |||||
Sbjct 22962 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 23021
Query 391169 ACAACGTTTAATTTT 391183
||||||| | |||||
Sbjct 23022 ACAACGTCTGATTTT 23036
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 24717 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 24776
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 24777 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 24836
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 24837 ACAACGTTTGATTTT 24851
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 338 GCAACGTCTGATTTT 352
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || |||||| ||||
Sbjct 24147 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATC 24206
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 24207 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 24266
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 24267 GCAACGTCTGATTTT 24281
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 25278 AATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATC 25337
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||| | | ||| || |||||||||||||| ||||||||||| |||||
Sbjct 25338 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 25397
Query 391169 ACAACGTTTAATTTT 391183
||| ||| | |||||
Sbjct 25398 ACAGCGTCTGATTTT 25412
Score = 91.5 bits (100), Expect = 6e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || || || ||||| || || | || || ||| ||||
Sbjct 24432 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 24491
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 24492 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 24551
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 24552 GCAACGTCTGATTTT 24566
>seq50
Length=223599
Score = 120 bits (132), Expect = 1e-21
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106
|| ||| | || ||||| || ||||| ||||| |||||||| || || || |||||| ||
Sbjct 2237 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 2178
Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166
|| || | ||| ||| | ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 2177 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 2118
Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192
|| ||| | ||||| || |||| ||
Sbjct 2117 CAGCAAAGATTAATCTTTGCAGGTAA 2092
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||
Sbjct 950 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 891
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 890 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 831
Query 391169 ACAACGTTTAATTTT 391183
||||| || || ||
Sbjct 830 GCAACGATTGATATT 816
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||
Sbjct 1236 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 1177
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1176 TGATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1117
Query 391169 ACAACGTTTAATTTT 391183
||||| || || ||
Sbjct 1116 GCAACGATTGATATT 1102
Score = 98.7 bits (108), Expect = 4e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||
Sbjct 1520 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 1461
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401
Query 391170 CAACGTTTAATTTT 391183
||||| || || ||
Sbjct 1400 CAACGATTGATATT 1387
Score = 98.7 bits (108), Expect = 4e-15
Identities = 103/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || |||||| | ||||| ||||| || || | || || || |||||
Sbjct 1807 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1748
Query 391110 GATA-ACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1747 GATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1688
Query 391169 ACAACGTTTAATTTT 391183
||||| || || ||
Sbjct 1687 GCAACGATTGATATT 1673
>seq3254
Length=450
Score = 104 bits (114), Expect = 9e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 412 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 353
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 352 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 293
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 292 ACAACGTTTGATTTT 278
Score = 98.7 bits (108), Expect = 4e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 129 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 70
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 69 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 10
Query 391169 ACAACGTTT 391177
|||||||||
Sbjct 9 ACAACGTTT 1
>seq1209
Length=1128
Score = 102 bits (112), Expect = 3e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || |||||| | ||||| ||||| || || | || || || |||||
Sbjct 180 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 239
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 240 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 299
Query 391170 CAACGTTTAATTTT 391183
||||| || || ||
Sbjct 300 CAACGATTGATATT 313
>seq542
Length=5403
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 338 GCAACGTCTGATTTT 352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975516116689028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |