Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq351 109 1e-18
seq286 109 1e-18
seq1723 87.8 4e-12
seq542 87.8 4e-12
seq50 87.8 4e-12
>seq351
Length=21764
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| || ||||| || || ||||||||||||||||||||||| |
Sbjct 19406 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 19347
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| || || || ||||| || || || || |||||||| |||| ||| |||||||
Sbjct 19346 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19287
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | |||||
Sbjct 19286 TCAACGTTTTCACAAATATCTGCAT 19262
Score = 87.8 bits (96), Expect = 4e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053
||||||||| || || || | |||||||| || |||||||| || ||||| ||||||||
Sbjct 20042 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAAT 19983
Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113
|||| || || || || || || || || ||| ||||| | || | || |||||
Sbjct 19982 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 19923
Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | || || ||||| | |||||||
Sbjct 19922 AGTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || || || ||||| || ||||| ||||| || ||||| |||||||||||
Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| || || || || ||| ||||| | ||| | ||| || || || |
Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
||| || ||||| | |||||||
Sbjct 20762 GAGTCTTAACGAAAATTTGCATT 20740
>seq286
Length=43880
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| || ||||| ||||| || |||||||||||||||||||| |
Sbjct 23379 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 23320
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| || || || ||||| || || || || |||||||| |||| ||| |||||||
Sbjct 23319 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 23260
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | |||||
Sbjct 23259 TCAACGTTTTCACAAATATCTGCAT 23235
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || || || ||||| || ||||| ||||| || ||||| |||||||||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| || || || || ||| ||||| | ||| | ||| || || || |
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
||| || ||||| | |||||||
Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218
>seq1723
Length=770
Score = 87.8 bits (96), Expect = 4e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053
||||||||| || || || | |||||||| || |||||||| || ||||| ||||||||
Sbjct 649 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAAT 590
Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113
|||| || || || || || || || || ||| ||||| | || | || |||||
Sbjct 589 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 530
Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | || || ||||| | |||||||
Sbjct 529 AGTAAGGGTCTTAACGAAAATTTGCATT 502
>seq542
Length=5403
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || || || ||||| || ||||| ||||| || ||||| |||||||||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| || || || || ||| ||||| | ||| | ||| || || || |
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
||| || ||||| | |||||||
Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218
>seq50
Length=223599
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| ||||| | || ||| || || |||||||||||||| || || ||||||||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || || |||||||| || ||| ||||| || || | || ||||| ||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109368006073097
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |