Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq351 109 1e-18 seq286 109 1e-18 seq1723 87.8 4e-12 seq542 87.8 4e-12 seq50 87.8 4e-12 >seq351 Length=21764 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| || || ||||| || ||||| || || ||||||||||||||||||||||| | Sbjct 19406 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 19347 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || || || ||||| || || || || |||||||| |||| ||| ||||||| Sbjct 19346 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19287 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| Sbjct 19286 TCAACGTTTTCACAAATATCTGCAT 19262 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||||||||| || || || | |||||||| || |||||||| || ||||| |||||||| Sbjct 20042 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAAT 19983 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||| || || || || || || || || ||| ||||| | || | || ||||| Sbjct 19982 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 19923 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | ||||||| Sbjct 19922 AGTAAGGGTCTTAACGAAAATTTGCATT 19895 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || ||||| || || || || ||| ||||| | ||| | ||| || || || | Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| | ||||||| Sbjct 20762 GAGTCTTAACGAAAATTTGCATT 20740 >seq286 Length=43880 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| || || ||||| || ||||| ||||| || |||||||||||||||||||| | Sbjct 23379 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 23320 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || || || ||||| || || || || |||||||| |||| ||| ||||||| Sbjct 23319 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 23260 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| Sbjct 23259 TCAACGTTTTCACAAATATCTGCAT 23235 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || ||||| || || || || ||| ||||| | ||| | ||| || || || | Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| | ||||||| Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218 >seq1723 Length=770 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||||||||| || || || | |||||||| || |||||||| || ||||| |||||||| Sbjct 649 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAAT 590 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||| || || || || || || || || ||| ||||| | || | || ||||| Sbjct 589 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 530 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | ||||||| Sbjct 529 AGTAAGGGTCTTAACGAAAATTTGCATT 502 >seq542 Length=5403 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || ||||| || || || || ||| ||||| | ||| | ||| || || || | Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| | ||||||| Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218 >seq50 Length=223599 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| ||||| | || ||| || || |||||||||||||| || || |||||||| Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || |||||||| || ||| ||||| || || | || ||||| || Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109368006073097