Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq20 297 2e-74
seq112 134 1e-25
seq1723 114 1e-19
seq351 114 1e-19
seq542 113 4e-19
seq286 113 4e-19
seq194 100 2e-15
seq3254 98.7 8e-15
seq135 93.3 3e-13
seq1209 91.5 1e-12
seq50 91.5 1e-12
seq21 86.0 5e-11
>seq20
Length=313988
Score = 297 bits (328), Expect = 2e-74
Identities = 397/548 (72%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||||| || || ||||| || || || || ||||||||||| || | || ||||||||
Sbjct 302743 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 302684
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||||||||||||||| |||||||| || | || || ||| ||||||| |||||||
Sbjct 302683 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 302624
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || |||| | |||| ||||| |||||| |||||| | |||||| |||
Sbjct 302623 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 302564
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| |||||||||| || || | || || | | ||| ||||| | | || ||| |
Sbjct 302563 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 302504
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288
|||||||| |||||||| ||| ||||| | || | |||| |||||| | ||| ||
Sbjct 302503 GATATGAAACATTGGCCATTCAAAATTATCAACG---ATGGATCGAAACCTAAAATTCAA 302447
Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347
| | | | | |||| || |||| |||||||| |||| ||||||| ||
Sbjct 302446 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 302388
Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407
| |||| ||||| |||| ||| |||| | | || || |||| |||||| |||||
Sbjct 302387 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 302328
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||||| || ||||||||||| || || || ||||| || || ||||| |||||| ||
Sbjct 302327 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 302268
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| |||||
Sbjct 302267 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 302208
Query 550528 ACTTGATA 550535
||||||||
Sbjct 302207 ACTTGATA 302200
Score = 87.8 bits (96), Expect = 1e-11
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| || || |||||||| ||||| || || ||||||||||||||||| || |||||||||
Sbjct 301168 GGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAAGTTACTTTTGACATCGATGCC 301109
Query 552567 AATGGAATTTTGAATGTGACTGC 552589
|| || |||||||| || ||||
Sbjct 301108 AACGGCATTTTGAACGTTTCTGC 301086
>seq112
Length=139861
Score = 134 bits (148), Expect = 1e-25
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | |
Sbjct 50990 CCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATTTG 51049
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | |||| || | || || ||||| ||||| || || ||||||||
Sbjct 51050 GGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAACGT 51109
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
|||||||| |||||||| || |||||||| ||||||||| |||| || ||||| |||
Sbjct 51110 CAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 51169
Query 550502 CC 550503
||
Sbjct 51170 CC 51171
Score = 105 bits (116), Expect = 5e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491
||||| |||||| |||| ||||| ||| || | | || ||||| ||| ||| |||||
Sbjct 52133 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGG 52192
Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551
| || || | || || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 52193 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 52252
Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||||||||||| | || || |||||| | || || ||
Sbjct 52253 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 52290
>seq1723
Length=770
Score = 114 bits (126), Expect = 1e-19
Identities = 115/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| ||||||||||| |||||||||||||||
Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
||| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 530
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || |||||||||||||||||
Sbjct 529 AGTAAGGGTCTTAACGAAAATTTGCAT 503
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | | || ||||| || |||||||| |||||||||||||||||
Sbjct 363 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 304
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
||| || || |||||||||| || ||| ||| | ||| | ||||| |||||
Sbjct 303 CCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGT 245
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 244 AAGAGTCTTAACAAAAATTTGCAT 221
>seq351
Length=21764
Score = 114 bits (126), Expect = 1e-19
Identities = 115/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| ||||||||||| |||||||||||||||
Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
||| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 19923
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || |||||||||||||||||
Sbjct 19922 AGTAAGGGTCTTAACGAAAATTTGCAT 19896
Score = 113 bits (124), Expect = 4e-19
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || |||||||| ||||||||||||||||| |
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || || ||
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTTAG 20762
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 20761 AGTCTTAACGAAAATTTGCAT 20741
Score = 105 bits (116), Expect = 5e-17
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| ||||||||||| ||||||||||| |||
Sbjct 21734 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 21675
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
||| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 21674 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 21616
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || ||||| |||||||||||
Sbjct 21615 AGTAAGGGTCTTAACAAAAATTTGCAT 21589
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| |
Sbjct 21163 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21104
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || |||||
Sbjct 21103 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 21045
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| ||||| |||||||||||
Sbjct 21044 AGTCTTAACAAAAATTTGCAT 21024
Score = 100 bits (110), Expect = 2e-15
Identities = 110/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | | ||||||||| || ||||||||||| ||||| || |||||
Sbjct 21449 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 21390
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
|||||| ||| |||||||||| || ||| ||| | || | ||||| || ||
Sbjct 21389 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGT 21331
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 21330 AAGAGTCTTAACAAAAATTTGCAT 21307
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | | || ||||| || |||||||| |||||||||||||||||
Sbjct 20601 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 20542
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
||| || || |||||||||| || ||| ||| | ||| | ||||| |||||
Sbjct 20541 CCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGT 20483
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 20482 AAGAGTCTTAACAAAAATTTGCAT 20459
Score = 91.5 bits (100), Expect = 1e-12
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | | ||||||||| || ||||||||||| ||||| || |||||
Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450
||| || || |||||||||| || | || ||| | || | ||||| || ||
Sbjct 20257 CCTTTCACATTTTCTATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCGGT 20199
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
||||| |||||||||||||||||
Sbjct 20198 GAGAGTCTTAACGAAAATTTGCAT 20175
>seq542
Length=5403
Score = 113 bits (124), Expect = 4e-19
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || |||||||| ||||||||||||||||| |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || || ||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTTAG 240
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 239 AGTCTTAACGAAAATTTGCAT 219
>seq286
Length=43880
Score = 113 bits (124), Expect = 4e-19
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || |||||||| ||||||||||||||||| |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || || ||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTTAG 240
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 239 AGTCTTAACGAAAATTTGCAT 219
Score = 109 bits (120), Expect = 4e-18
Identities = 114/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| || |||||||| |||||||||||||||
Sbjct 24014 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 23955
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
||| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 23954 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 23896
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || |||||||||||||||||
Sbjct 23895 AGTAAGGGTCTTAACGAAAATTTGCAT 23869
Score = 105 bits (116), Expect = 5e-17
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| || |||||||| |||||||||||||||
Sbjct 25145 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 25086
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
||| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 25085 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 25027
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || ||||| |||||||||||
Sbjct 25026 AGTAAGGGTCTTAACAAAAATTTGCAT 25000
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| |
Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24513
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || |||||
Sbjct 24512 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 24454
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| ||||| |||||||||||
Sbjct 24453 AGTCTTAACAAAAATTTGCAT 24433
Score = 102 bits (112), Expect = 7e-16
Identities = 110/142 (77%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| |
Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24228
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAA 563452
||||| ||| |||||||||| || || || ||| | || | ||||| || ||||
Sbjct 24227 TTTACATTCTCTATTGTATCAG-ATG-GTTCAACTTCCAAGGTGATCGTTTTGCCGGTAA 24170
Query 563453 GAGTTTTAACGAAAATTTGCAT 563474
|||| ||||| |||||||||||
Sbjct 24169 GAGTCTTAACAAAAATTTGCAT 24148
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | | ||| ||||| || ||||||||||| ||||| || |||||
Sbjct 24860 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 24801
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
|||||| ||| |||||||||| || ||| ||| | || | ||||| || ||
Sbjct 24800 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGT 24742
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 24741 AAGAGTCTTAACAAAAATTTGCAT 24718
>seq194
Length=91910
Score = 100 bits (110), Expect = 2e-15
Identities = 122/164 (74%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711
||| || || |||||||| |||||||| || || | || ||||||||||||||||
Sbjct 13581 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 13640
Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770
| |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | |
Sbjct 13641 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 13699
Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814
|||| |||| || |||||||| ||| || |||| |||||||
Sbjct 13700 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 13743
>seq3254
Length=450
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| |
Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || |||||
Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 390
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 391 AGTCTTAACGAAAATTTGCAT 411
Score = 91.5 bits (100), Expect = 1e-12
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411
||| ||||| || ||||||||||| ||||| || ||||| |||||| ||| |||||
Sbjct 6 TTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGT 65
Query 563412 ATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470
||||| || ||| ||| | || | ||||| || |||||||| |||||||||||||
Sbjct 66 ATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTT 124
Query 563471 GCAT 563474
||||
Sbjct 125 GCAT 128
>seq135
Length=120030
Score = 93.3 bits (102), Expect = 3e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599
||||| |||| ||||||| || | |||||||| |||||||| | || | | ||||
Sbjct 51420 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTC 51361
Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659
||||||||||| |||| ||| ||||| | || | ||| | | | ||||
Sbjct 51360 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 51301
Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719
||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | |
Sbjct 51300 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 51241
Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745
|||||||| |||||| |||||||
Sbjct 51240 CAAAATTACAAAGAAGTCATTGATCC 51215
>seq1209
Length=1128
Score = 91.5 bits (100), Expect = 1e-12
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 319 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 260
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||||| ||||||| || ||| ||| | || | ||||| ||||| |
Sbjct 259 TTTACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 201
Query 563454 AGTTTTAACGAAAATTTGCATA 563475
||||| || ||||| ||||||
Sbjct 200 TGTTTTCACAAAAATCTGCATA 179
>seq50
Length=223599
Score = 91.5 bits (100), Expect = 1e-12
Identities = 109/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | ||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449
||| || || || || || || || || ||| || || | |||||| ||||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 2209
Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || ||||| || ||||||
Sbjct 2210 TAAGTGTCTTCACGAATATCTGCATA 2235
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 810 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 869
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||||| ||||||| || ||| ||| | || | ||||| ||||| |
Sbjct 870 TTTACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 928
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||| || ||||| |||||
Sbjct 929 TGTTTTCACAAAAATCTGCAT 949
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 1096 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1155
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || ||| ||| | || | ||||| ||||| |
Sbjct 1156 TTCACATTTTCAATTGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 1214
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||| || ||||| |||||
Sbjct 1215 TGTTTTCACAAAAATCTGCAT 1235
>seq21
Length=311613
Score = 86.0 bits (94), Expect = 5e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
||||| ||||| || ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 236607 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 236548
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596
||||| || | |||| | |||| | |||
Sbjct 236547 AATGGTATAGTTCATGTCAGTGCTCGAGAT 236518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028873399880590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |