Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1723 136 3e-27
seq351 136 3e-27
seq286 131 1e-25
seq1209 125 6e-24
seq50 125 6e-24
seq542 122 7e-23
seq3254 116 3e-21
>seq1723
Length=770
Score = 136 bits (150), Expect = 3e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 370 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 311
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 310 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 251
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||| || ||||| || |||||
Sbjct 250 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 221
Score = 120 bits (132), Expect = 2e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || || || || |||||
Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCAT 503
>seq351
Length=21764
Score = 136 bits (150), Expect = 3e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 20608 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 20549
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 20548 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 20489
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||| || ||||| || |||||
Sbjct 20488 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 20459
Score = 131 bits (144), Expect = 1e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 19076 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 19017
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| | ||||| || | ||||||||| ||||| | ||||| ||
Sbjct 19016 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 18957
Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||||| ||||||||||||||
Sbjct 18956 AGTCAGAGTTTTGACAAATATCTGCAT 18930
Score = 127 bits (140), Expect = 2e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || | ||||||||||| || |||||||||||||| |||||||| |
Sbjct 19406 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 19347
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||||||| |||| | || || |||| || |||||||| || | |||||| || |
Sbjct 19346 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19287
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||||||
Sbjct 19286 TCAACGTTTTCACAAATATCTGCAT 19262
Score = 127 bits (140), Expect = 2e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| || ||||| || ||||| ||||| ||||| ||
Sbjct 21456 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 21397
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 21396 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 21337
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 21336 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 21307
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| || |||||||||||||||||
Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||||||||
Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 20762 GAGTCTTAACGAAAATTTGCAT 20741
Score = 120 bits (132), Expect = 2e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || || || || |||||
Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCAT 19896
Score = 120 bits (132), Expect = 2e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| || |||||||||||
Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || ||||| || |||||
Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCAT 21589
Score = 118 bits (130), Expect = 8e-22
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
|| || |||||| ||||| |||||||| || ||||| || ||||| ||||| ||||| ||
Sbjct 20324 CATTTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 20265
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||| ||| |||||| || ||||| | ||||||||| | |||| |||||
Sbjct 20264 TATTTTCCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTT 20205
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || || || || |||||
Sbjct 20204 GCCGGTGAGAGTCTTAACGAAAATTTGCAT 20175
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||| ||||| || |||||
Sbjct 21165 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCC 21106
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 21105 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 21046
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 21045 GAGTCTTAACAAAAATTTGCAT 21024
>seq286
Length=43880
Score = 131 bits (144), Expect = 1e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 23049 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 22990
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| | ||||| || | ||||||||| ||||| | ||||| ||
Sbjct 22989 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 22930
Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||||| ||||||||||||||
Sbjct 22929 AGTCAGAGTTTTCACAAATATCTGCAT 22903
Score = 131 bits (144), Expect = 1e-25
Identities = 119/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 24867 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 24808
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 24807 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 24748
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 24747 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 24718
Score = 125 bits (138), Expect = 6e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || ||||| || |||||
Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCAT 25000
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| || |||||||||||||||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||||||||
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 240 GAGTCTTAACGAAAATTTGCAT 219
Score = 122 bits (134), Expect = 7e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| |
Sbjct 23379 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 23320
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||||||| |||| | || || |||| || |||||||| || | |||||| || |
Sbjct 23319 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 23260
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||||||
Sbjct 23259 TCAACGTTTTCACAAATATCTGCAT 23235
Score = 120 bits (132), Expect = 2e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| ||| |||||| || ||||| | ||| ||||| | ||| | |||||
Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || || || || |||||
Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCAT 23869
Score = 116 bits (128), Expect = 3e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| |||||||||||| || ||||| || || ||||||||||| ||
Sbjct 25420 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 25361
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || ||||| ||||| | ||||||||| | |||| ||||| |||||||
Sbjct 25360 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTTA 25301
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || ||||| || |||||
Sbjct 25300 GGGTCTTAACAAAAATTTGCAT 25279
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||| ||||| || |||||
Sbjct 24289 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 24230
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 24229 CTTTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAA 24170
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 24169 GAGTCTTAACAAAAATTTGCAT 24148
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||| ||||| || |||||
Sbjct 24574 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 24515
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 24514 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 24455
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 24454 GAGTCTTAACAAAAATTTGCAT 24433
>seq1209
Length=1128
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 321 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 262
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||| | || ||||| | || ||||| | |||| ||||| || ||||
Sbjct 261 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 202
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 201 ATGTTTTCACAAAAATCTGCAT 180
>seq50
Length=223599
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 808 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 867
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||| | || ||||| | || ||||| | |||| ||||| || ||||
Sbjct 868 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 927
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 928 ATGTTTTCACAAAAATCTGCAT 949
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 1094 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1153
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| |||| | || ||||| | || ||||| | |||| ||||| || ||||
Sbjct 1154 TTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1213
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 1214 ATGTTTTCACAAAAATCTGCAT 1235
Score = 116 bits (128), Expect = 3e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 1379 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1438
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| |||| | || || || | || ||||| | |||| ||||| || ||||
Sbjct 1439 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1498
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 1499 ATGTTTTCACAAAAATCTGCAT 1520
Score = 116 bits (128), Expect = 3e-21
Identities = 112/143 (78%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 1665 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1724
Query 101388 GTTTTACAATTTCTA-CAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| |||| | || ||||| | || ||||| | |||| ||||| || |||
Sbjct 1725 TTTTCACATTTTCAATNNGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 1784
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||| ||||||||
Sbjct 1785 AATGTTTTCACAAAAATCTGCAT 1807
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| || || | || ||||| || ||||||||||| ||||| ||||||||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || ||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || |||||||||||
Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234
>seq542
Length=5403
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| || |||||||||||||||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||||||||
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 240 GAGTCTTAACGAAAATTTGCAT 219
>seq3254
Length=450
Score = 116 bits (128), Expect = 3e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||||||| |||||||| || ||||| ||||| ||||| || |||||
Sbjct 270 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 329
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 330 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 389
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 390 GAGTCTTAACGAAAATTTGCAT 411
Score = 100 bits (110), Expect = 2e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401
||||| |||||||| || ||||| ||||| ||||| || ||||| ||||||| | |||
Sbjct 1 AAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCT 60
Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461
| || ||||| | ||| ||||| | |||| |||||||||||| | ||| || || ||
Sbjct 61 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAA 120
Query 101462 ATCTGCAT 101469
|| |||||
Sbjct 121 ATTTGCAT 128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396239806322787
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |