Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq351 105 5e-18 seq286 96.9 3e-15 seq13 93.3 3e-14 >seq351 Length=21764 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| || || ||||||||||||| |||| ||| || ||||| ||||| Sbjct 19406 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 19347 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 19346 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19287 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 19286 TCAACGTTTTCACAAATATCTGCATC 19261 >seq286 Length=43880 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| || || ||||||||||| | || | ||| || ||||| ||||| Sbjct 23379 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 23320 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 23319 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 23260 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 23259 TCAACGTTTTCACAAATATCTGCATC 23234 >seq13 Length=353560 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||| | ||||||||| | || || |||||| ||| ||| ||| Sbjct 123480 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 123539 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||||| || || ||||||||||| |||| | || || || Sbjct 123540 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 123599 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | ||||||| |||||| | || | ||||| || || || || ||||| ||||| Sbjct 123600 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 123659 Query 9255 TCCCACCGG 9263 || || || Sbjct 123660 GCCGACAGG 123668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380900500368093