Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq351 105 5e-18
seq286 96.9 3e-15
seq13 93.3 3e-14
>seq351
Length=21764
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||||| |||| ||| || ||||| |||||
Sbjct 19406 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 19347
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 19346 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19287
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 19286 TCAACGTTTTCACAAATATCTGCATC 19261
>seq286
Length=43880
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 23379 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 23320
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 23319 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 23260
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 23259 TCAACGTTTTCACAAATATCTGCATC 23234
>seq13
Length=353560
Score = 93.3 bits (102), Expect = 3e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134
|||| |||||||||| | ||||||||| | || || |||||| ||| ||| |||
Sbjct 123480 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 123539
Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194
| | |||||| | | ||||| || || ||||||||||| |||| | || || ||
Sbjct 123540 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 123599
Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254
|| | ||||||| |||||| | || | ||||| || || || || ||||| |||||
Sbjct 123600 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 123659
Query 9255 TCCCACCGG 9263
|| || ||
Sbjct 123660 GCCGACAGG 123668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380900500368093
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |