Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq20 336 1e-86
seq1723 118 7e-21
seq351 118 7e-21
seq286 116 2e-20
seq112 113 3e-19
seq3254 107 1e-17
seq542 107 1e-17
seq135 96.9 2e-14
seq194 93.3 3e-13
seq21 91.5 1e-12
>seq20
Length=313988
Score = 336 bits (372), Expect = 1e-86
Identities = 444/611 (73%), Gaps = 11/611 (2%)
Strand=Plus/Minus
Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376
||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || |
Sbjct 302755 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 302696
Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436
|| |||||||||| ||||| |||||||| || ||||| ||| | || || ||| |||
Sbjct 302695 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 302636
Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496
||| |||| || || || |||| || ||||||||||| || ||| |||||| ||| |
Sbjct 302635 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 302576
Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556
|||||| |||||| |||||||||| || || | || |||||| ||||||||| |
Sbjct 302575 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 302516
Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616
| || || ||||||||| |||||||| || || | || || | ||| |||||
Sbjct 302515 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 302456
Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674
| || ||| |||||| ||| || | || |||| |||| ||| |||| |
Sbjct 302455 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 302398
Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732
| ||||| |||| || ||||| |||| || |||| ||| | ||| || || |
Sbjct 302397 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 302340
Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 302339 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 302280
Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852
|| |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || ||
Sbjct 302279 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 302220
Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909
| |||||||||| ||||||| || || | ||| ||||||| | || |||||
Sbjct 302219 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 302160
Query 474910 TTGTGGAGGTA 474920
| |||| ||||
Sbjct 302159 TGGTGGTGGTA 302149
>seq1723
Length=770
Score = 118 bits (130), Expect = 7e-21
Identities = 114/144 (79%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| ||||||||||| || || ||||||||
Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| ||
Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCC 530
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 529 AGTAAGGGTCTTAACGAAAATTTG 506
Score = 96.9 bits (106), Expect = 2e-14
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | ||| |||||||| || |||||||| || || ||||||||
Sbjct 367 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 308
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| |
Sbjct 307 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 249
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||||||||| ||||||||
Sbjct 248 CAGTAAGAGTCTTAACAAAAATTTG 224
>seq351
Length=21764
Score = 118 bits (130), Expect = 7e-21
Identities = 114/144 (79%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| ||||||||||| || || ||||||||
Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| ||
Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCC 19923
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 19922 AGTAAGGGTCTTAACGAAAATTTG 19899
Score = 114 bits (126), Expect = 8e-20
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||| ||||| || |||||||||||||| || || ||
Sbjct 20321 TTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 20262
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| ||| || ||||||| || | | || ||| | | || ||||| |
Sbjct 20261 TTTCCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATG-TGATGGTTTTGC 20203
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||||||||||||||||||||||||
Sbjct 20202 CGGTGAGAGTCTTAACGAAAATTTG 20178
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| ||||||||||| || || ||||| ||
Sbjct 21734 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 21675
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 21674 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 21616
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||||||
Sbjct 21615 AGTAAGGGTCTTAACAAAAATTTG 21592
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 20760 GTCTTAACGAAAATTTG 20744
Score = 104 bits (114), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 21163 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21104
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 21103 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 21044
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 21043 GTCTTAACAAAAATTTG 21027
Score = 102 bits (112), Expect = 5e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||| ||||| || |||||||||||||| || || ||
Sbjct 21453 TTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 21394
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| || || ||||||| || ||| | ||| || ||||| ||
Sbjct 21393 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 21334
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||||||||| ||||||||
Sbjct 21333 GGTAAGAGTCTTAACAAAAATTTG 21310
Score = 96.9 bits (106), Expect = 2e-14
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | ||| |||||||| || |||||||| || || ||||||||
Sbjct 20605 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 20546
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| |
Sbjct 20545 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 20487
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||||||||| ||||||||
Sbjct 20486 CAGTAAGAGTCTTAACAAAAATTTG 20462
Score = 95.1 bits (104), Expect = 8e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || ||||| ||||| |||||||||||||| |
Sbjct 19401 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 19342
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 19341 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19282
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 19281 GTTTTCACAAATATCTG 19265
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 19076 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 19017
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 19016 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 18957
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 18956 AGTCAGAGTTTTGACAAATATCTG 18933
>seq286
Length=43880
Score = 116 bits (128), Expect = 2e-20
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 25418 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 25359
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || ||||| ||||| ||
Sbjct 25358 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCGGTTAG 25300
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 25299 GGTCTTAACAAAAATTTG 25282
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 24014 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 23955
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| ||
Sbjct 23954 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCC 23896
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 23895 AGTAAGGGTCTTAACGAAAATTTG 23872
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24228
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | || || ||||| | || ||||| ||||| ||
Sbjct 24227 TTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGG-TGATCGTTTTGCCGGTAAG 24169
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 24168 AGTCTTAACAAAAATTTG 24151
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 25145 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 25086
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 25085 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 25027
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||||||
Sbjct 25026 AGTAAGGGTCTTAACAAAAATTTG 25003
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 238 GTCTTAACGAAAATTTG 222
Score = 107 bits (118), Expect = 1e-17
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24513
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||||| | || ||||| ||||| ||
Sbjct 24512 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTAAG 24454
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 24453 AGTCTTAACAAAAATTTG 24436
Score = 107 bits (118), Expect = 1e-17
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 24864 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 24805
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| || || ||||||| || ||| | ||| || ||||| ||
Sbjct 24804 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 24745
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||||||||| ||||||||
Sbjct 24744 GGTAAGAGTCTTAACAAAAATTTG 24721
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 23049 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 22990
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 22989 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 22930
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 22929 AGTCAGAGTTTTCACAAATATCTG 22906
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| |||||||||||||| |
Sbjct 23374 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 23315
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 23314 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 23255
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 23254 GTTTTCACAAATATCTG 23238
>seq112
Length=139861
Score = 113 bits (124), Expect = 3e-19
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
||||||| ||| || | || ||| ||||||| | |||||||| |||||||||
Sbjct 50969 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 51028
Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756
||| || ||| | ||| | || ||||||| | |||| || | || ||||||||
Sbjct 51029 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 51087
Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816
||||| || ||| | ||||||||||| || |||||||| || | ||||| ||||||||
Sbjct 51088 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 51147
Query 474817 TGTTTTACGTATTATTAATGAACC 474840
|||| | || || || || |||||
Sbjct 51148 TGTTGTTCGAATCATCAACGAACC 51171
Score = 89.7 bits (98), Expect = 3e-12
Identities = 241/366 (66%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
||||| || |||||||| || || || ||||| ||||| || | || | || ||| ||
Sbjct 51917 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 51976
Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912
|| ||| ||| | || |||| || | ||||| | ||| | | || || ||
Sbjct 51977 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 52030
Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972
||||| || || || | ||||| || || ||| ||| ||||| | || |||
Sbjct 52031 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 52090
Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032
||||| | |||| ||| | | || ||||| | || || || || ||| | ||
Sbjct 52091 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 52150
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092
||||| ||| || | | || ||||| ||| | ||||| | || |||| ||
Sbjct 52151 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGACCGGC 52210
Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152
|| ||||| ||||| | || || || |||||||||||||| || ||||| || | ||
Sbjct 52211 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGTGAAC 52270
Query 476153 GGTATT 476158
|| |||
Sbjct 52271 GGCATT 52276
>seq3254
Length=450
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||||||||| || || || || |
Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 392 GTCTTAACGAAAATTTG 408
Score = 91.5 bits (100), Expect = 1e-12
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 480647 ACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAAT 480706
|||||||||||| || |||||||||||||| || || || || ||| ||| || ||
Sbjct 3 ACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTAT 62
Query 480707 AGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766
||||||| || ||| | ||| || ||||| ||||| |||||||||||||||||
Sbjct 63 TGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAAT 122
Query 480767 TTG 480769
|||
Sbjct 123 TTG 125
>seq542
Length=5403
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 238 GTCTTAACGAAAATTTG 222
>seq135
Length=120030
Score = 96.9 bits (106), Expect = 2e-14
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134
|||| ||||||| ||| |||| ||||| |||||||| | || || ||| |||||||
Sbjct 51413 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 51354
Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193
|||| ||| ||| ||||| || ||| | ||||| || | | |||| |||
Sbjct 51353 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 51295
Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253
|| ||||| | |||||||| |||| || ||||| || ||||||| | |||||||
Sbjct 51294 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 51235
Query 296254 TATAAAGAGATTATTGATCC 296273
|| ||||| | ||||||||
Sbjct 51234 TACAAAGAAGTCATTGATCC 51215
>seq194
Length=91910
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173
||||| || || |||||||||||| || | || |||||||||||||||||| ||
Sbjct 13588 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 13647
Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233
||||| ||||| || ||| ||||||||| | || | || || | ||||
Sbjct 13648 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 13707
Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277
||| | | || |||||| |||| ||||||||||| ||||||||
Sbjct 13708 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 13751
>seq21
Length=311613
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| ||||| || || | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 236607 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 236548
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|||||||| || |||| | |||| | |||
Sbjct 236547 AATGGTATAGTTCATGTCAGTGCTCGAGAT 236518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267836427237668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |