Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq20 306 5e-78
seq351 140 4e-28
seq286 134 2e-26
seq50 134 2e-26
seq1209 129 8e-25
seq112 122 1e-22
seq542 116 5e-21
seq3254 113 6e-20
seq1723 113 6e-20
seq4 96.9 5e-15
>seq20
Length=313988
Score = 306 bits (338), Expect = 5e-78
Identities = 485/692 (70%), Gaps = 9/692 (1%)
Strand=Plus/Minus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|||||||| || ||||| || ||||| ||| |||||||| || | || ||| |
Sbjct 302743 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 302684
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| || ||||| | || || ||||| || ||||| || ||| || ||||| || ||
Sbjct 302683 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 302624
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| ||||| || |||||||||| ||||||||||| || |||| ||| |||
Sbjct 302623 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 302564
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| || ||||| |||||||| || || ||||| ||| ||| || ||
Sbjct 302563 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 302504
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596
||||| || | ||| | | || || | || || ||| || |||| |||
Sbjct 302503 GATATGAAACATTGGCCATTCAAAATTATCAACGATG-----GATCGAAACCTAAAATTC 302449
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
| || |||| | || ||| ||| |||| | || |||||||| |||||||||
Sbjct 302448 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 302389
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| ||
Sbjct 302388 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 302329
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| ||||| || || || || | ||||| || || |||||||| || ||||||| | |
Sbjct 302328 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 302269
Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
|| | ||| | || ||| || | || ||||| |||||||||||||||||||||||||||
Sbjct 302268 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 302210
Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895
|| || || | || | || || |||||| |||| ||||| || |||||||||
Sbjct 302209 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 302150
Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955
|| |||||||| || || | | || |||| ||| || || || || ||| |||| |||
Sbjct 302149 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 302090
Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| |||||| | |||||||| || |||||
Sbjct 302089 GGTGACACTCATTTGGGTGGTGAGGACTTCGA 302058
>seq351
Length=21764
Score = 140 bits (154), Expect = 4e-28
Identities = 116/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| |||||
Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||||||||| |||||
Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||||||||
Sbjct 19382 CAGCGGCTTATTTTTGCTGGTA 19403
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 21024 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21083
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| ||||||
Sbjct 21084 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 21143
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 21144 CAACGTCTGATTTTTGCTGGTA 21165
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| ||||| || ||||| ||||| || || || || || || | |||
Sbjct 18930 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 18989
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||||| || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 18990 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19049
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 19050 CAACGTCTGATTTTTGCTGGTAA 19072
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 21307 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21366
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| ||||||
Sbjct 21367 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 21426
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 21427 CAACGTTTGATTTTTGCTGGTAA 21449
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || || || || ||||| |||||| | || || || | ||
Sbjct 20741 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 20800
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 20801 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 20860
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 20861 CAACGTCTGATTTTTGCTGGTA 20882
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 19896 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19955
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || ||||||||||| || || ||||| || |||||
Sbjct 19956 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 20015
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 20016 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 20045
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||||||||||||||| || || | || || || | ||
Sbjct 21589 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 21648
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || |||||||| || || ||||| || |||||
Sbjct 21649 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 21708
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 21709 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 21738
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || |||||||||||||| || || | || || || | ||
Sbjct 20459 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20518
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 20519 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 20578
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| || | || |||||||||||
Sbjct 20579 CAGCGTTTGATATTTGCTGGTAA 20601
Score = 105 bits (116), Expect = 9e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || || || || ||||| ||||| | || || || | ||
Sbjct 20175 ATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 20234
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| ||||||
Sbjct 20235 GATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 20294
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 20295 CAACGTTTGATTTTTGCTGGTAA 20317
>seq286
Length=43880
Score = 134 bits (148), Expect = 2e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| |||||
Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||| ||||| |||||
Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||||||||
Sbjct 23355 CAGCGGCTTATTTTTGCTGGTA 23376
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || ||||| | ||
Sbjct 24148 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCT 24207
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 24208 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24267
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 24268 CAACGTCTGATTTTTGCTGGTA 24289
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 24433 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 24492
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 24493 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24552
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 24553 CAACGTCTGATTTTTGCTGGTA 24574
Score = 123 bits (136), Expect = 3e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| || ||||| ||||| || || || || || || | |||
Sbjct 22903 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 22962
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||||| || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 22963 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 23022
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 23023 CAACGTCTGATTTTTGCTGGTAA 23045
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||||||||||||||| || || | || || || | ||
Sbjct 25000 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 25059
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || ||||||||||| || || |||||||| |||||
Sbjct 25060 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 25119
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 25120 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 25149
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 23869 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 23928
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || ||||||||||| || || |||||||| |||||
Sbjct 23929 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 23988
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 23989 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 24018
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || || || || ||||| |||||| | || || || | ||
Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 339 CAACGTCTGATTTTTGCTGGTA 360
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 24718 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 24777
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 24778 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 24837
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 24838 CAACGTTTGATTTTTGCTGGTAA 24860
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| || || ||||| ||||| | || || || | ||
Sbjct 25279 ATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATCT 25338
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || | || || | |||| ||||||||||||||||| || ||||| || |||||
Sbjct 25339 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 25398
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || |||||||||||||
Sbjct 25399 CAGCGTCTGATTTTTGCTGGTA 25420
>seq50
Length=223599
Score = 134 bits (148), Expect = 2e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 1522 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 1463
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
|||| || || || || | ||| || |||||||||||||||||||||||||| ||||
Sbjct 1462 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 1403
Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003
|||||||| | || ||||||||||
Sbjct 1402 AGCAACGATTGATATTTGCTGGTA 1379
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | ||
Sbjct 1235 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1176
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| || |||||||||||||||||||||||||| ||||||
Sbjct 1175 GATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1116
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|||||| | || ||||||||||
Sbjct 1115 CAACGATTGATATTTGCTGGTA 1094
Score = 129 bits (142), Expect = 8e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920
|||||| || || ||||| || ||||||||||||||||| || || || ||||| | ||
Sbjct 2235 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 2176
Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980
|||||| ||||| || | ||| || ||||| ||||||||||||||||| || |||||
Sbjct 2175 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 2116
Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004
|||| || | || ||||| |||||
Sbjct 2115 GCAAAGATTAATCTTTGCAGGTAA 2092
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | ||
Sbjct 949 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 890
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || || | ||| || |||||||||||||||||||||||||| ||||||
Sbjct 889 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 830
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|||||| | || ||||||||||
Sbjct 829 CAACGATTGATATTTGCTGGTA 808
Score = 123 bits (136), Expect = 3e-23
Identities = 115/145 (79%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 1809 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 1750
Query 171920 CAGACACA-ATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978
| || || || || || | ||| || |||||||||||||||||||||||||| |||
Sbjct 1749 CTGATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGAT 1690
Query 171979 CAGCAACGACTTATTTTTGCTGGTA 172003
||||||||| | || ||||||||||
Sbjct 1689 CAGCAACGATTGATATTTGCTGGTA 1665
>seq1209
Length=1128
Score = 129 bits (142), Expect = 8e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 178 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 237
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| || || || || || | ||| || |||||||||||||||||||||||||| ||||
Sbjct 238 CTGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 297
Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003
|||||||| | || ||||||||||
Sbjct 298 AGCAACGATTGATATTTGCTGGTA 321
>seq112
Length=139861
Score = 122 bits (134), Expect = 1e-22
Identities = 318/484 (66%), Gaps = 6/484 (1%)
Strand=Plus/Plus
Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392
||||||| || | | |||| |||||| || ||||| | ||||| || || || || |
Sbjct 50691 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 50750
Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449
|| || ||||| || || ||||| || || ||||| | || || ||||| |
Sbjct 50751 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 50810
Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509
|||||||| | | || ||| ||||| || || || || |||||| | | ||||
Sbjct 50811 AAAATCAGTTGACCACAAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGTC 50870
Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569
| | | |||||||||| | |||| ||| || ||| | | || || |||
Sbjct 50871 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 50929
Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629
| | || || | || | || || ||||||| |||||| ||
Sbjct 50930 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTCA 50987
Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689
|||||||||||||||| | ||||| ||| | || ||||| || | ||| || |||
Sbjct 50988 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATT 51047
Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749
|||| ||| |||||| |||| || || || || || ||||| |||| ||| ||||||
Sbjct 51048 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAAC 51107
Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809
| || || || || || || | | ||||| ||||| || | || |||| ||||| |
Sbjct 51108 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 51167
Query 195810 AACC 195813
||||
Sbjct 51168 AACC 51171
Score = 111 bits (122), Expect = 2e-19
Identities = 328/502 (65%), Gaps = 8/502 (2%)
Strand=Plus/Plus
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||| || || ||||| || || || ||||| || || ||||||| || | || |||
Sbjct 51914 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 51973
Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492
| || ||| | || |||||| |||| | || || || | | ||||
Sbjct 51974 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 52027
Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552
||||||| | || || || ||||| || | ||| ||||| || | |||||
Sbjct 52028 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 52087
Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612
||||| || | || || | |||| ||||| || ||| |||||||||
Sbjct 52088 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTT 52147
Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671
| ||||| ||||| || || | || || || ||||| ||||| | |||||| ||||
Sbjct 52148 TTCGAAGGCGAACGA-CCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGAC 52206
Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731
|| || || | || || | || || ||||| ||| | ||| |||||||| ||||
Sbjct 52207 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGT 52266
Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791
|| || ||| | ||||||| || || ||||| | | | ||||| | |||||
Sbjct 52267 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 52326
Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851
|||||||||||| | || || || ||| || ||||| || ||| | | |||||
Sbjct 52327 CATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 52386
Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873
||||| || |||||| |||
Sbjct 52387 CGAAAAATATGCGGAAGAGGAC 52408
Score = 89.7 bits (98), Expect = 7e-13
Identities = 116/160 (73%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
||| || ||||||||||| || ||||||||||| || ||| ||| |||||| | ||
Sbjct 51224 AACTGCTGCTGCAATTGCATACGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 51280
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| | ||||| || ||||| ||||| || || | | || | |||||| |||| |
Sbjct 51281 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 51340
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973
|||||||| | ||||| ||||||||||||| | |||
Sbjct 51341 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 51380
>seq542
Length=5403
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || || || || ||||| |||||| | || || || | ||
Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||||
Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 339 CAACGTCTGATTTTTGCTGGTA 360
>seq3254
Length=450
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 411 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 352
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||
Sbjct 351 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 292
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | |||||||||||||
Sbjct 291 CAACGTTTGATTTTTGCTGGTA 270
Score = 95.1 bits (104), Expect = 2e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 128 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 69
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||
Sbjct 68 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 9
Query 171982 CAACG 171986
|||||
Sbjct 8 CAACG 4
>seq1723
Length=770
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 503 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 562
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || ||||||||||| || || ||||| || |||||
Sbjct 563 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 622
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 623 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 652
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || |||||||||||||| || || | || || || | ||
Sbjct 221 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 280
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 281 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 340
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| || | || |||||||||||
Sbjct 341 CAGCGTTTGATATTTGCTGGTAA 363
>seq4
Length=582728
Score = 96.9 bits (106), Expect = 5e-15
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||| |||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 336314 AGGGATTCCACCTGATCAACAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 336255
Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051
||| | | |||||||| |||| |||||
Sbjct 336254 TACTTTGTCCGATTACAATATTCAGAAAGG 336225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657796687769520
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