Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq20 306 5e-78 seq351 140 4e-28 seq286 134 2e-26 seq50 134 2e-26 seq1209 129 8e-25 seq112 122 1e-22 seq542 116 5e-21 seq3254 113 6e-20 seq1723 113 6e-20 seq4 96.9 5e-15 >seq20 Length=313988 Score = 306 bits (338), Expect = 5e-78 Identities = 485/692 (70%), Gaps = 9/692 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 302743 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 302684 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 302683 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 302624 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||||| || |||||||||| ||||||||||| || |||| ||| ||| Sbjct 302623 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 302564 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| || || ||||| ||| ||| || || Sbjct 302563 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 302504 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596 ||||| || | ||| | | || || | || || ||| || |||| ||| Sbjct 302503 GATATGAAACATTGGCCATTCAAAATTATCAACGATG-----GATCGAAACCTAAAATTC 302449 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || ||| ||| |||| | || |||||||| ||||||||| Sbjct 302448 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 302389 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| || Sbjct 302388 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 302329 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || || || | ||||| || || |||||||| || ||||||| | | Sbjct 302328 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 302269 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | ||| | || ||| || | || ||||| ||||||||||||||||||||||||||| Sbjct 302268 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 302210 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || || || | || | || || |||||| |||| ||||| || ||||||||| Sbjct 302209 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 302150 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| || || | | || |||| ||| || || || || ||| |||| ||| Sbjct 302149 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 302090 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| |||||| | |||||||| || ||||| Sbjct 302089 GGTGACACTCATTTGGGTGGTGAGGACTTCGA 302058 >seq351 Length=21764 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||||||||| ||||| Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 19382 CAGCGGCTTATTTTTGCTGGTA 19403 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 21024 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21083 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| |||||| Sbjct 21084 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 21143 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 21144 CAACGTCTGATTTTTGCTGGTA 21165 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || || | ||| Sbjct 18930 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 18989 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 18990 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19049 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 19050 CAACGTCTGATTTTTGCTGGTAA 19072 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 21307 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21366 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| |||||| Sbjct 21367 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 21426 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 21427 CAACGTTTGATTTTTGCTGGTAA 21449 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || ||||| |||||| | || || || | || Sbjct 20741 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 20800 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||| Sbjct 20801 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 20860 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 20861 CAACGTCTGATTTTTGCTGGTA 20882 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 19896 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19955 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || ||||||||||| || || ||||| || ||||| Sbjct 19956 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 20015 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 20016 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 20045 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||||||||||||||| || || | || || || | || Sbjct 21589 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 21648 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || |||||||| || || ||||| || ||||| Sbjct 21649 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 21708 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 21709 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 21738 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||||||||| || || | || || || | || Sbjct 20459 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20518 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 20519 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 20578 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || | || ||||||||||| Sbjct 20579 CAGCGTTTGATATTTGCTGGTAA 20601 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || ||||| ||||| | || || || | || Sbjct 20175 ATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 20234 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| |||||| Sbjct 20235 GATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 20294 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 20295 CAACGTTTGATTTTTGCTGGTAA 20317 >seq286 Length=43880 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 23355 CAGCGGCTTATTTTTGCTGGTA 23376 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || ||||| | || Sbjct 24148 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCT 24207 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 24208 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24267 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 24268 CAACGTCTGATTTTTGCTGGTA 24289 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 24433 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 24492 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 24493 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24552 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 24553 CAACGTCTGATTTTTGCTGGTA 24574 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 22903 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 22962 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 22963 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 23022 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 23023 CAACGTCTGATTTTTGCTGGTAA 23045 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||||||||||||||| || || | || || || | || Sbjct 25000 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 25059 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || ||||||||||| || || |||||||| ||||| Sbjct 25060 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 25119 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 25120 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 25149 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 23869 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 23928 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || ||||||||||| || || |||||||| ||||| Sbjct 23929 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 23988 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 23989 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 24018 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || ||||| |||||| | || || || | || Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||| Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 339 CAACGTCTGATTTTTGCTGGTA 360 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 24718 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 24777 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 24778 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 24837 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 24838 CAACGTTTGATTTTTGCTGGTAA 24860 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| || || ||||| ||||| | || || || | || Sbjct 25279 ATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATCT 25338 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || || | |||| ||||||||||||||||| || ||||| || ||||| Sbjct 25339 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 25398 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||||||||||| Sbjct 25399 CAGCGTCTGATTTTTGCTGGTA 25420 >seq50 Length=223599 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 1522 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 1463 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || || || || | ||| || |||||||||||||||||||||||||| |||| Sbjct 1462 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 1403 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||||||| | || |||||||||| Sbjct 1402 AGCAACGATTGATATTTGCTGGTA 1379 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | || Sbjct 1235 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1176 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| || |||||||||||||||||||||||||| |||||| Sbjct 1175 GATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1116 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 1115 CAACGATTGATATTTGCTGGTA 1094 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 2235 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 2176 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 2175 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 2116 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 2115 GCAAAGATTAATCTTTGCAGGTAA 2092 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | || Sbjct 949 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 890 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||| || |||||||||||||||||||||||||| |||||| Sbjct 889 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 830 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 829 CAACGATTGATATTTGCTGGTA 808 Score = 123 bits (136), Expect = 3e-23 Identities = 115/145 (79%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 1809 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 1750 Query 171920 CAGACACA-ATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 | || || || || || | ||| || |||||||||||||||||||||||||| ||| Sbjct 1749 CTGATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGAT 1690 Query 171979 CAGCAACGACTTATTTTTGCTGGTA 172003 ||||||||| | || |||||||||| Sbjct 1689 CAGCAACGATTGATATTTGCTGGTA 1665 >seq1209 Length=1128 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 178 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 237 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | ||| || |||||||||||||||||||||||||| |||| Sbjct 238 CTGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 297 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||||||| | || |||||||||| Sbjct 298 AGCAACGATTGATATTTGCTGGTA 321 >seq112 Length=139861 Score = 122 bits (134), Expect = 1e-22 Identities = 318/484 (66%), Gaps = 6/484 (1%) Strand=Plus/Plus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || || | Sbjct 50691 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 50750 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || ||||| || || ||||| | || || ||||| | Sbjct 50751 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 50810 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || || || |||||| | | |||| Sbjct 50811 AAAATCAGTTGACCACAAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGTC 50870 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | |||||||||| | |||| ||| || ||| | | || || ||| Sbjct 50871 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 50929 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | || || | || | || || ||||||| |||||| || Sbjct 50930 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTCA 50987 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| || ||| Sbjct 50988 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATT 51047 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || || ||||| |||| ||| |||||| Sbjct 51048 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAAC 51107 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | || || || || || || | | ||||| ||||| || | || |||| ||||| | Sbjct 51108 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 51167 Query 195810 AACC 195813 |||| Sbjct 51168 AACC 51171 Score = 111 bits (122), Expect = 2e-19 Identities = 328/502 (65%), Gaps = 8/502 (2%) Strand=Plus/Plus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || || ||||| || || || ||||| || || ||||||| || | || ||| Sbjct 51914 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 51973 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || ||| | || |||||| |||| | || || || | | |||| Sbjct 51974 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 52027 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| || | ||| ||||| || | ||||| Sbjct 52028 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 52087 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||||| || | || || | |||| ||||| || ||| ||||||||| Sbjct 52088 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTT 52147 Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 | ||||| ||||| || || | || || || ||||| ||||| | |||||| |||| Sbjct 52148 TTCGAAGGCGAACGA-CCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGAC 52206 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || || | || || ||||| ||| | ||| |||||||| |||| Sbjct 52207 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGT 52266 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||||| || || ||||| | | | ||||| | ||||| Sbjct 52267 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 52326 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 |||||||||||| | || || || ||| || ||||| || ||| | | ||||| Sbjct 52327 CATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 52386 Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873 ||||| || |||||| ||| Sbjct 52387 CGAAAAATATGCGGAAGAGGAC 52408 Score = 89.7 bits (98), Expect = 7e-13 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| || ||||||||||| || ||| ||| |||||| | || Sbjct 51224 AACTGCTGCTGCAATTGCATACGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 51280 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 51281 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 51340 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 |||||||| | ||||| ||||||||||||| | ||| Sbjct 51341 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 51380 >seq542 Length=5403 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || ||||| |||||| | || || || | || Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||| Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 339 CAACGTCTGATTTTTGCTGGTA 360 >seq3254 Length=450 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 411 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 352 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||| Sbjct 351 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 292 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 291 CAACGTTTGATTTTTGCTGGTA 270 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 128 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 69 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||| Sbjct 68 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 9 Query 171982 CAACG 171986 ||||| Sbjct 8 CAACG 4 >seq1723 Length=770 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 503 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 562 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || ||||||||||| || || ||||| || ||||| Sbjct 563 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 622 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 623 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 652 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||||||||| || || | || || || | || Sbjct 221 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 280 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 281 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 340 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || | || ||||||||||| Sbjct 341 CAGCGTTTGATATTTGCTGGTAA 363 >seq4 Length=582728 Score = 96.9 bits (106), Expect = 5e-15 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||| Sbjct 336314 AGGGATTCCACCTGATCAACAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 336255 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 336254 TACTTTGTCCGATTACAATATTCAGAAAGG 336225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657796687769520