Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq50 116 7e-21
seq351 113 8e-20
seq1723 109 1e-18
seq286 104 4e-17
seq542 93.3 8e-14
>seq50
Length=223599
Score = 116 bits (128), Expect = 7e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| |||||||| || ||||||||||| || ||||| ||||| || |||||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|||| | |||| || || || || | ||||||||||| ||||||||||| || ||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376
|| || || || ||||| ||||| | | | |||| |||
Sbjct 2212 AGTGTCTTCACGAATATCTGCATAATTTGAATAAATTAA 2250
>seq351
Length=21764
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| ||||| ||||| ||||||||||||
Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCATT 21588
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|||| || || ||||| || || | ||||||||| || || ||||| |||||||||||
Sbjct 20607 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 20548
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 20547 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20488
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 20487 CCAGTAAGAGTCTTAACAAAAATTTGCATT 20458
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| ||||| ||||| |||||||||||
Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || || |||||||||
Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || |||||
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 20760 GTCTTAACGAAAATTTGCATT 20740
>seq1723
Length=770
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|||| || || ||||| || || | ||||||||| || || ||||| |||||||||||
Sbjct 369 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 310
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 309 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 250
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 249 CCAGTAAGAGTCTTAACAAAAATTTGCATT 220
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| ||||| ||||| |||||||||||
Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || || |||||||||
Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCATT 502
>seq286
Length=43880
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| || || ||||| |||||||||||
Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCATT 24999
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| || || ||||| |||||||||||
Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || || |||||||||
Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCATT 23868
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || |||||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
>seq542
Length=5403
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || ||||| ||||||||||| |||||| |
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || ||||| || | || ||||||| || || ||||| || |||||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || || || |||||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899564535771120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |