Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq351 123 4e-23 seq50 123 4e-23 seq1209 116 5e-21 seq1723 114 2e-20 seq286 114 2e-20 >seq351 Length=21764 Score = 123 bits (136), Expect = 4e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| || Sbjct 21588 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 21647 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||||||||||||||| || || ||||| || || Sbjct 21648 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 21707 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 21708 ACAACGTTTGATTTTTGCTGGTAAGCAG 21735 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 19895 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19954 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || ||||| || || Sbjct 19955 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 20014 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 20015 ACAACGTTTGATTTTTGCTGGTAAGCAG 20042 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| || Sbjct 20458 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20517 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 20518 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20577 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||| | ||| |||||| Sbjct 20578 ACAGCGTTTGATATTTGCTGGTAAG 20602 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || || || ||| Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 19382 CAGCGGCTTATTTTTGCTGGTATGC 19406 >seq50 Length=223599 Score = 123 bits (136), Expect = 4e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 1236 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 1177 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 1176 TGATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1117 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 1116 GCAACGATTGATATTTGCTGGTA 1094 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 950 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 891 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || || Sbjct 890 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 831 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 830 GCAACGATTGATATTTGCTGGTA 808 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 1520 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 1461 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 1400 CAACGATTGATATTTGCTGGTA 1379 Score = 116 bits (128), Expect = 5e-21 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 1807 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1748 Query 155883 GATA-ATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 1747 GATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1688 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 1687 GCAACGATTGATATTTGCTGGTA 1665 Score = 105 bits (116), Expect = 1e-17 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| || Sbjct 2248 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 2190 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| || || | || ||| || |||| |||||| || ||||| |||||| Sbjct 2189 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 2130 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965 || ||||| || || |||||||| || | ||| ||||| Sbjct 2129 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 2092 >seq1209 Length=1128 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 180 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 239 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| |||||| |||||||| |||||||| || || || || Sbjct 240 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 299 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 300 CAACGATTGATATTTGCTGGTA 321 >seq1723 Length=770 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 502 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 561 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || ||||| || || Sbjct 562 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 621 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 622 ACAACGTTTGATTTTTGCTGGTAAGCAG 649 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| || Sbjct 220 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 279 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 280 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 339 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||| | ||| |||||| Sbjct 340 ACAGCGTTTGATATTTGCTGGTAAG 364 >seq286 Length=43880 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| || Sbjct 24999 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 25058 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 25059 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 25118 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 25119 ACAACGTTTGATTTTTGCTGGTAAGCAG 25146 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 23868 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 23927 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 23928 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 23987 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 23988 ACAACGTTTGATTTTTGCTGGTAAGCAG 24015 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 23355 CAGCGGCTTATTTTTGCTGGTATGC 23379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731798895135600