Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq351 123 4e-23
seq50 123 4e-23
seq1209 116 5e-21
seq1723 114 2e-20
seq286 114 2e-20
>seq351
Length=21764
Score = 123 bits (136), Expect = 4e-23
Identities = 116/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 21588 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 21647
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||||||||||||||| || || ||||| || ||
Sbjct 21648 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 21707
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 21708 ACAACGTTTGATTTTTGCTGGTAAGCAG 21735
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 19895 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19954
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || ||||| || ||
Sbjct 19955 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 20014
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 20015 ACAACGTTTGATTTTTGCTGGTAAGCAG 20042
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 20458 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20517
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 20518 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20577
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
||| | ||||| | ||| ||||||
Sbjct 20578 ACAGCGTTTGATATTTGCTGGTAAG 20602
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || || || |||
Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 19382 CAGCGGCTTATTTTTGCTGGTATGC 19406
>seq50
Length=223599
Score = 123 bits (136), Expect = 4e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 1236 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 1177
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 1176 TGATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1117
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 1116 GCAACGATTGATATTTGCTGGTA 1094
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 950 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 891
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || ||
Sbjct 890 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 831
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 830 GCAACGATTGATATTTGCTGGTA 808
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 1520 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 1461
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 1400 CAACGATTGATATTTGCTGGTA 1379
Score = 116 bits (128), Expect = 5e-21
Identities = 112/143 (78%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || |||
Sbjct 1807 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1748
Query 155883 GATA-ATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 1747 GATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1688
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 1687 GCAACGATTGATATTTGCTGGTA 1665
Score = 105 bits (116), Expect = 1e-17
Identities = 119/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| ||
Sbjct 2248 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 2190
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
||||| ||| || || | || ||| || |||| |||||| || ||||| ||||||
Sbjct 2189 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 2130
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965
|| ||||| || || |||||||| || | ||| |||||
Sbjct 2129 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 2092
>seq1209
Length=1128
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || |||
Sbjct 180 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 239
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| |||||| |||||||| |||||||| || || || ||
Sbjct 240 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 299
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 300 CAACGATTGATATTTGCTGGTA 321
>seq1723
Length=770
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 502 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 561
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || ||||| || ||
Sbjct 562 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 621
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 622 ACAACGTTTGATTTTTGCTGGTAAGCAG 649
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 220 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 279
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 280 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 339
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
||| | ||||| | ||| ||||||
Sbjct 340 ACAGCGTTTGATATTTGCTGGTAAG 364
>seq286
Length=43880
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 24999 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 25058
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 25059 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 25118
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 25119 ACAACGTTTGATTTTTGCTGGTAAGCAG 25146
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 23868 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 23927
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 23928 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 23987
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 23988 ACAACGTTTGATTTTTGCTGGTAAGCAG 24015
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 23355 CAGCGGCTTATTTTTGCTGGTATGC 23379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731798895135600
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