Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq50 127 4e-24 seq1209 125 1e-23 seq1723 120 6e-22 seq351 120 6e-22 seq286 120 6e-22 seq3254 105 1e-17 seq542 100 6e-16 >seq50 Length=223599 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 808 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 867 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | ||| || | |||||||| | || || ||||| ||||||| Sbjct 868 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 927 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | ||| ||||||||| Sbjct 928 ATGTTTTCACAAAAATCTGCATT 950 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 1379 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1438 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | |||||| | |||||||| | || || ||||| ||||||| Sbjct 1439 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1498 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 1499 ATGTTTTCACAAAAATCTGCAT 1520 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 1094 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1153 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | ||| || | |||||||| | || || ||||| ||||||| Sbjct 1154 TTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1213 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | ||| ||||||||| Sbjct 1214 ATGTTTTCACAAAAATCTGCATT 1236 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| || | ||||| | ||| |||||||| || || ||||| ||||| Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||| || | ||||||||||| Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234 Score = 116 bits (128), Expect = 7e-21 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 1665 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1724 Query 192455 TTTTTACATTAGTTAT-AGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| || | ||| || | |||||||| | || || ||||| |||||| Sbjct 1725 TTTTCACATTTTCAATNNGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 1784 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 |||||||| | ||| |||||||| Sbjct 1785 AATGTTTTCACAAAAATCTGCAT 1807 >seq1209 Length=1128 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 321 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 262 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | ||| || | |||||||| | || || ||||| ||||||| Sbjct 261 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 202 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 201 ATGTTTTCACAAAAATCTGCAT 180 >seq1723 Length=770 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | ||||||||| ||||| ||||| ||||||||||| Sbjct 370 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 311 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 310 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 251 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 250 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 220 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| || || ||||| ||||||||||| Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCATT 502 >seq351 Length=21764 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | ||||||||| ||||| ||||| ||||||||||| Sbjct 20608 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 20549 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 20548 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 20489 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 20488 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 20458 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 192514 AATGTTTTAATAAATATCTGCATTT 192538 | ||||| | |||||||||||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCATTT 18928 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| ||||| || || Sbjct 19403 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 19344 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 19343 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 19284 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 19283 ACGTTTTCACAAATATCTGCAT 19262 Score = 113 bits (124), Expect = 9e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| || || ||||| |||||||||||| Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCATT 21588 Score = 111 bits (122), Expect = 3e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | || ||||| ||||| |||||||| ||||| || Sbjct 21456 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 21397 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 |||||| ||||||||| ||| | ||| || | ||||||||||| || || ||||| Sbjct 21396 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 21337 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| ||| || |||||| Sbjct 21336 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 21306 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| || || ||||| ||||||||||| Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19895 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || |||| Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 20762 GAGTCTTAACGAAAATTTGCATT 20740 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| |||||||| ||||| |||||||| Sbjct 21165 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCC 21106 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || | Sbjct 21105 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 21046 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 21045 GAGTCTTAACAAAAATTTGCATT 21023 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | || ||||| ||||| |||||||| ||||| |||||||| Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| ||| | ||| || | ||| ||||| | || |||||||| || || Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || |||| || || |||||| Sbjct 20197 AGAGTCTTAACGAAAATTTGCATT 20174 >seq286 Length=43880 Score = 120 bits (132), Expect = 6e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| ||||| || || Sbjct 23376 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 23317 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 23316 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 23257 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 23256 ACGTTTTCACAAATATCTGCAT 23235 Score = 114 bits (126), Expect = 3e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| || Sbjct 24867 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 24808 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 |||||| ||||||||| ||| | ||| || | ||||||||||| || || ||||| Sbjct 24807 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 24748 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| ||| || |||||| Sbjct 24747 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 24717 Score = 113 bits (124), Expect = 9e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCATT 24999 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCATT 23868 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || |||| Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218 >seq3254 Length=450 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || || | |||||||| ||||| |||||||| ||||| |||||||| Sbjct 270 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 329 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || | Sbjct 330 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 389 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 390 GAGTCTTAACGAAAATTTGCATT 412 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| |||||||| ||||| |||||||| ||||||||| ||| | | Sbjct 7 TGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTA 66 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||||||||||| || || ||||| || || | || |||| || || ||| Sbjct 67 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGC 126 Query 192535 ATT 192537 ||| Sbjct 127 ATT 129 >seq542 Length=5403 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || |||| Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || || |||||| Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984379204322850