Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq50 123 5e-23
seq1209 122 2e-22
seq286 120 5e-22
seq351 118 2e-21
seq3254 114 2e-20
seq1723 114 2e-20
seq542 109 1e-18
>seq50
Length=223599
Score = 123 bits (136), Expect = 5e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 808 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 867
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || ||||| || | |||||||| | || || ||||| |||||||
Sbjct 868 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 927
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
||||||| | || |||||||||
Sbjct 928 ATGTTTTCACAAAAATCTGCATT 950
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 1379 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1438
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || |||||||| | |||||||| | || || ||||| |||||||
Sbjct 1439 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1498
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| | || ||||||||
Sbjct 1499 ATGTTTTCACAAAAATCTGCAT 1520
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 1094 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1153
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || ||||| || | |||||||| | || || ||||| |||||||
Sbjct 1154 TTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1213
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
||||||| | || |||||||||
Sbjct 1214 ATGTTTTCACAAAAATCTGCATT 1236
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| ||||| |||||||| || || ||||| || || ||||| ||||| || ||||||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || || ||||| | ||| |||||||| || || ||||| |||||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| ||| || | ||||||||||||
Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234
Score = 111 bits (122), Expect = 3e-19
Identities = 111/143 (78%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 1665 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 1724
Query 171988 TTTTTACATTAGTTATA-GTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 1725 TTTTCACATTTTCAATNNGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 1784
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 1785 AATGTTTTCACAAAAATCTGCAT 1807
>seq1209
Length=1128
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 321 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 262
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || ||||| || | |||||||| | || || ||||| |||||||
Sbjct 261 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 202
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| | || ||||||||
Sbjct 201 ATGTTTTCACAAAAATCTGCAT 180
>seq286
Length=43880
Score = 120 bits (132), Expect = 5e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900
Score = 118 bits (130), Expect = 2e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 24017 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 23958
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 23957 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 23898
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 23897 CCAGTAAGGGTCTTAACGAAAATTTGCATT 23868
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 23376 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 23317
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 23316 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 23257
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 23256 ACGTTTTCACAAATATCTGCAT 23235
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||
Sbjct 24867 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 24808
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||||| || || |||||
Sbjct 24807 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 24748
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 24747 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 24717
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 25148 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 25089
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 25088 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 25029
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 25028 CCAGTAAGGGTCTTAACAAAAATTTGCATT 24999
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||| ||||||||||| |||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || ||||
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| |||||||| ||||| ||||||||
Sbjct 24574 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 24515
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 24514 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 24455
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 24454 GAGTCTTAACAAAAATTTGCATT 24432
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| |||||||| ||||| ||||||||
Sbjct 24289 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 24230
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||| ||||| | || || ||||| || || |
Sbjct 24229 CTTTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAA 24170
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 24169 GAGTCTTAACAAAAATTTGCATT 24147
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || || || ||||| || |||||||| || ||
Sbjct 25420 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 25361
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| | |||||| || | ||| ||||| | || |||||||| || ||||
Sbjct 25360 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTTA 25301
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 25300 GGGTCTTAACAAAAATTTGCATT 25278
>seq351
Length=21764
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 172047 AATGTTTTAATGAATATCTGCATTT 172071
| ||||| | |||||||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCATTT 18928
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 19403 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 19344
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 19343 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 19284
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 19283 ACGTTTTCACAAATATCTGCAT 19262
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| ||||||||||| || || | |||||| || ||||| ||||| |||||||||||
Sbjct 20608 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 20549
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 20548 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 20489
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 20488 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 20458
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || || || ||||| |||||||||||
Sbjct 20044 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 19985
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 19984 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19925
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 19924 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || || || ||||| ||||||||||||
Sbjct 21737 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 21678
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 21677 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 21618
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 21617 CCAGTAAGGGTCTTAACAAAAATTTGCATT 21588
Score = 111 bits (122), Expect = 3e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | || || || ||||| |||||||| ||||| ||
Sbjct 21456 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 21397
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||||| || || |||||
Sbjct 21396 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 21337
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 21336 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 21306
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||| ||||||||||| |||||
Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || ||||
Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 20762 GAGTCTTAACGAAAATTTGCATT 20740
Score = 102 bits (112), Expect = 1e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| || | || || || ||||| |||||||| ||||| ||||||||
Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| ||| ||||| || | ||| ||||| | || |||||||| || ||
Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198
Query 172047 AATGTTTTAATGAATATCTGCATT 172070
| || |||| ||| || ||||||
Sbjct 20197 AGAGTCTTAACGAAAATTTGCATT 20174
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| |||||||| ||||| ||||||||
Sbjct 21165 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCC 21106
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 21105 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 21046
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 21045 GAGTCTTAACAAAAATTTGCATT 21023
>seq3254
Length=450
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | ||||| || ||||| |||||||| ||||| ||||||||
Sbjct 270 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 329
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 330 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 389
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 390 GAGTCTTAACGAAAATTTGCATT 412
Score = 96.9 bits (106), Expect = 6e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| || ||||| |||||||| ||||| |||||||| ||||||||| ||| |||
Sbjct 7 TGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTA 66
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || | ||||||||||| || || ||||| || || | || |||| ||| || |||
Sbjct 67 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGC 126
Query 172068 ATT 172070
|||
Sbjct 127 ATT 129
>seq1723
Length=770
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| ||||||||||| || || | |||||| || ||||| ||||| |||||||||||
Sbjct 370 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 311
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 310 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 251
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 250 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 220
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || || || ||||| |||||||||||
Sbjct 651 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGA 592
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 591 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 532
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 531 CCAGTAAGGGTCTTAACGAAAATTTGCATT 502
>seq542
Length=5403
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||| ||||||||||| |||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || ||||
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 240 GAGTCTTAACGAAAATTTGCATT 218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905045588227800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |