Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1209 114 2e-20 seq50 114 2e-20 seq351 111 2e-19 seq286 105 1e-17 seq1723 96.9 5e-15 >seq1209 Length=1128 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 181 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 240 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| |||||| ||| ||| |||||||||||||| ||||| | Sbjct 241 ATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 300 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 301 AACGATTGATATTTGCTGGTA 321 >seq50 Length=223599 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 948 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 889 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| |||||| ||| ||| |||||||||||||| ||||| | Sbjct 888 ATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 829 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 828 AACGATTGATATTTGCTGGTA 808 Score = 114 bits (126), Expect = 2e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || || | ||||||||||| ||||||||||| || | || ||||| | || | Sbjct 1519 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 1461 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| ||||| Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 ||| || | || ||||| |||| Sbjct 1400 CAACGATTGATATTTGCTGGTA 1379 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 1234 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 1175 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| ||||| | Sbjct 1174 ATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 1115 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 1114 AACGATTGATATTTGCTGGTA 1094 Score = 105 bits (116), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 1806 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 1747 Query 146092 ATACT-ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| ||||| Sbjct 1746 ATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1687 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 ||| || | || ||||| |||| Sbjct 1686 CAACGATTGATATTTGCTGGTA 1665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 2233 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 2175 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 2174 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 2115 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 2114 CAAAGATTAATCTTTGCAGGTAA 2092 >seq351 Length=21764 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 19263 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 19322 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || ||| ||||||||||||||||| ||||||| Sbjct 19323 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAAC 19382 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 19383 AGCGGCTTATTTTTGCTGGTA 19403 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| | Sbjct 19897 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 19956 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || ||||| || ||||||| Sbjct 19957 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAAC 20016 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||||| || || Sbjct 20017 AACGTTTGATTTTTGCTGGTAAGCAGTT 20044 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||||| | Sbjct 21590 TGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 21649 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||||||| |||||| || ||||| || ||||||| Sbjct 21650 ATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAAC 21709 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||||| || || Sbjct 21710 AACGTTTGATTTTTGCTGGTAAGCAGTT 21737 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 18931 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 18990 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 18991 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 19050 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 19051 AACGTCTGATTTTTGCTGGTAA 19072 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||||| | Sbjct 20460 TGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 20519 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 20520 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 20579 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 | | | || ||||| ||||| |||| Sbjct 20580 AGCGTTTGATATTTGCTGGTAAGTAATT 20607 >seq286 Length=43880 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 23236 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 23295 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || ||| ||||||||||| ||||| ||||||| Sbjct 23296 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 23355 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 23356 AGCGGCTTATTTTTGCTGGTA 23376 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| | Sbjct 23870 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 23929 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 23930 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 23989 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||||| || || Sbjct 23990 AACGTTTGATTTTTGCTGGTAAGCAGTT 24017 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||||| | Sbjct 25001 TGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 25060 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 25061 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 25120 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||||| || || Sbjct 25121 AACGTTTGATTTTTGCTGGTAAGCAGTT 25148 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 22904 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 22963 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 22964 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 23023 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 23024 AACGTCTGATTTTTGCTGGTAA 23045 >seq1723 Length=770 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| | Sbjct 504 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 563 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || ||||| || ||||||| Sbjct 564 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAAC 623 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||||| || || Sbjct 624 AACGTTTGATTTTTGCTGGTAAGCAGTT 651 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||||| | Sbjct 222 TGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 281 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 282 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 341 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 | | | || ||||| ||||| |||| Sbjct 342 AGCGTTTGATATTTGCTGGTAAGTAATT 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786087871803720