Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq20 345 3e-89 seq112 141 7e-28 seq132 105 5e-17 seq67 89.7 4e-12 >seq20 Length=313988 Score = 345 bits (382), Expect = 3e-89 Identities = 497/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Plus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 302044 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 302103 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 302104 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 302163 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 302164 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 302223 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 302224 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 302283 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 302284 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 302343 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 302344 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 302403 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 302404 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 302463 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 ||| | || |||| ||| |||||||||| ||||||||| || || || |||| Sbjct 302464 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 302523 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 302524 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 302583 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||||| ||| || |||||||||||||| |||| || || || || | |||||| || Sbjct 302584 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 302643 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 302644 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 302703 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 302704 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 302744 Score = 114 bits (126), Expect = 1e-19 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 301575 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 301634 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 301635 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 301693 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 301694 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCCACTGG 301753 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 301754 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 301813 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | ||||| |||||| Sbjct 301814 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 301855 >seq112 Length=139861 Score = 141 bits (156), Expect = 7e-28 Identities = 344/512 (67%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 51171 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 51112 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||||| |||||| ||||| || ||||| || | ||||||| | | |||||||| Sbjct 51111 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 51052 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 51051 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 50992 Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||| | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 50991 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 50936 Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 50935 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 50876 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722 |||| ||| | | || |||||||| || | ||||| ||||| | || | | Sbjct 50875 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTTGTGGTCAAC-T 50817 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 50816 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 50757 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || | ||||| || |||||||| |||||||||||||| |||||| | | || | Sbjct 50756 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 50697 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 | || ||| ||| || ||| || |||||| Sbjct 50696 CAAC---ACTGAAAATTATTC--AATTCAATA 50670 >seq132 Length=123387 Score = 105 bits (116), Expect = 5e-17 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 96424 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 96483 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 ||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 96484 GTAACCCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 96543 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 96544 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 96587 >seq67 Length=189510 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 164595 TACAGGACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCA 164654 |||| ||| |||||||||||| | ||||||| | |||| || ||||| ||||| || | | Sbjct 41298 TACAAGACGGTTTGGGAAATTTCCCAAAAATGCGTCATAGACATGGCCGCTGAAAGGGGA 41357 Query 164655 CCTTTTGTTGATCAAACACAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGA 164714 | || |||| ||| | ||| ||||| | |||| | | || | || ||| | | Sbjct 41358 GCATTCATTGACCAATCCCAGTCGTTGAATATTCACATAGCCGAGCCGAATTATGCTAAA 41417 Query 164715 TTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTG 164774 || | || | || || | |||| ||| ||||| ||||| || ||||| |||||| Sbjct 41418 TTGACATCAATGCATTTCTACGGCTGGAAGAAGGGTCTGAAAACTGGGATGTACTATTTG 41477 Query 164775 AGATCTAAACCAGC 164788 ||| | || ||||| Sbjct 41478 AGAACCAAGCCAGC 41491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740238075669966