Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1723 131 3e-25
seq351 131 3e-25
seq286 131 3e-25
seq50 129 1e-24
seq1209 127 4e-24
seq542 120 6e-22
seq3254 114 3e-20
seq4 89.7 1e-12
>seq1723
Length=770
Score = 131 bits (144), Expect = 3e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| ||||| ||||| || |||||||||||
Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 529
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| || || || ||||||
Sbjct 528 GTAAGGGTCTTAACGAAAATTTGCATT 502
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | |||||||| || || ||||| || ||||||||||| ||
Sbjct 363 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 304
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| |||||||||||||||||||| || || || ||
Sbjct 303 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 244
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 243 AGAGTCTTAACAAAAATTTGCATT 220
>seq351
Length=21764
Score = 131 bits (144), Expect = 3e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| ||||| ||||| || |||||||||||
Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19922
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| || || || ||||||
Sbjct 19921 GTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 131 bits (144), Expect = 3e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| ||||| ||||| || |||||||| ||
Sbjct 21734 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 21675
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 21674 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 21615
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| ||||| || ||||||
Sbjct 21614 GTAAGGGTCTTAACAAAAATTTGCATT 21588
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 21163 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21104
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 21103 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 21044
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 21043 GTCTTAACAAAAATTTGCATT 21023
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||| || || || ||||| || ||||||||||| |
Sbjct 19401 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 19342
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 19341 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19282
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 19281 GTTTTCACAAATATCTGCAT 19262
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | |||||||| || || ||||| || ||||||||||| ||
Sbjct 20601 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 20542
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| |||||||||||||||||||| || || || ||
Sbjct 20541 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 20482
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 20481 AGAGTCTTAACAAAAATTTGCATT 20458
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || ||||| || ||||||||||| || ||
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 20760 GTCTTAACGAAAATTTGCATT 20740
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||| ||||| || || |||||||||||||| || || ||
Sbjct 21449 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 21390
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| ||||||||||| || || ||||| ||||| ||
Sbjct 21389 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 21330
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 21329 AGAGTCTTAACAAAAATTTGCATT 21306
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || || ||||| ||||||| ||| || || || || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCATT 18929
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||| ||||| || || |||||||||||||| || || ||
Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| ||||| |||||||| || || || ||||| ||
Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| || || || ||||||
Sbjct 20197 AGAGTCTTAACGAAAATTTGCATT 20174
>seq286
Length=43880
Score = 131 bits (144), Expect = 3e-25
Identities = 117/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || ||||| || |||||||||||
Sbjct 25145 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 25086
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 25085 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 25026
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| ||||| || ||||||
Sbjct 25025 GTAAGGGTCTTAACAAAAATTTGCATT 24999
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24513
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || ||||| ||||| || |
Sbjct 24512 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24453
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 24452 GTCTTAACAAAAATTTGCATT 24432
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || ||||||||||| |
Sbjct 23374 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 23315
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 23314 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 23255
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 23254 GTTTTCACAAATATCTGCAT 23235
Score = 125 bits (138), Expect = 1e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || ||||| || |||||||||||
Sbjct 24014 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 23955
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 23954 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 23895
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| || || || ||||||
Sbjct 23894 GTAAGGGTCTTAACGAAAATTTGCATT 23868
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24228
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||| |||||||| || ||||| ||||| || |
Sbjct 24227 TTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24168
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 24167 GTCTTAACAAAAATTTGCATT 24147
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 25418 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 25359
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||| |||||| ||||| |||||||| || || || || || || |
Sbjct 25358 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTTAGG 25299
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 25298 GTCTTAACAAAAATTTGCATT 25278
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || ||||| || ||||||||||| || ||
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || |||||||||||||| || || ||
Sbjct 24860 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 24801
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| ||||||||||| || || ||||| ||||| ||
Sbjct 24800 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 24741
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 24740 AGAGTCTTAACAAAAATTTGCATT 24717
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || || ||||| ||||||| ||| || || || || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATT 22902
>seq50
Length=223599
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| || |
Sbjct 810 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 869
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 870 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 929
Query 82791 GTCTTTACAAATATCTGCATT 82811
|| || ||||| |||||||||
Sbjct 930 GTTTTCACAAAAATCTGCATT 950
Score = 123 bits (136), Expect = 5e-23
Identities = 114/142 (80%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 1096 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTTACT 1154
Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| ||||||||||| |||||| || ||||||||||| || || || || || || ||
Sbjct 1155 TTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 1214
Query 82790 CGTCTTTACAAATATCTGCATT 82811
|| || ||||| |||||||||
Sbjct 1215 TGTTTTCACAAAAATCTGCATT 1236
Score = 122 bits (134), Expect = 2e-22
Identities = 113/141 (80%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 1381 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTTACT 1439
Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| ||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 1440 TTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 1499
Query 82790 CGTCTTTACAAATATCTGCAT 82810
|| || ||||| ||||||||
Sbjct 1500 TGTTTTCACAAAAATCTGCAT 1520
Score = 116 bits (128), Expect = 7e-21
Identities = 113/142 (80%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 1667 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTTACT 1725
Query 82731 TTT-ACATTTTCAAT-CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCA 82788
||| ||||||||||| |||||| || ||||||||||| || || || || || || |
Sbjct 1726 TTTCACATTTTCAATNNGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 1785
Query 82789 ACGTCTTTACAAATATCTGCAT 82810
| || || ||||| ||||||||
Sbjct 1786 ATGTTTTCACAAAAATCTGCAT 1807
Score = 116 bits (128), Expect = 7e-21
Identities = 116/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 2150
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| |||||||| || || || ||||| ||||| | ||||| || || || ||
Sbjct 2151 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 2210
Query 82787 CAACGTCTTTACAAATATCTGCATTATT 82814
| ||||| || ||||||||||| |||
Sbjct 2211 AAGTGTCTTCACGAATATCTGCATAATT 2238
>seq1209
Length=1128
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| || |
Sbjct 319 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 260
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 259 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 200
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||| ||||||||
Sbjct 199 GTTTTCACAAAAATCTGCAT 180
>seq542
Length=5403
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || ||||| || ||||||||||| || ||
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
>seq3254
Length=450
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || |||||||||||||| || || || ||
Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 392 GTCTTAACGAAAATTTGCATT 412
Score = 107 bits (118), Expect = 4e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747
||||||||| || || |||||||||||||| || || || |||||||||| || || ||
Sbjct 6 TTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGT 65
Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807
|||| ||||||||||| || || ||||| ||||| || | ||||| || || || ||
Sbjct 66 ATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTG 125
Query 82808 CATT 82811
||||
Sbjct 126 CATT 129
>seq4
Length=582728
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|||||||| || ||||| || || || ||||| | ||| |||||| ||| || ||||||
Sbjct 336361 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 336420
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| | || || |||||||| |||||
Sbjct 336421 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 336464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981726675928949
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |