Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq542 86.0 6e-12
seq351 86.0 6e-12
seq286 86.0 6e-12
>seq542
Length=5403
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || ||||||| ||| ||||||| | ||||| ||| ||| |
Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAA-CCATC 277
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || ||| | |||||| |||||| ||||||||||| || || || |||||
Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337
Query 25294 GCAAAGACTCATTT 25307
|||| | || ||||
Sbjct 338 GCAACGTCTGATTT 351
>seq351
Length=21764
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || ||||||| ||| ||||||| | ||||| ||| ||| |
Sbjct 20741 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAA-CCATC 20799
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || ||| | |||||| |||||| ||||||||||| || || || |||||
Sbjct 20800 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 20859
Query 25294 GCAAAGACTCATTT 25307
|||| | || ||||
Sbjct 20860 GCAACGTCTGATTT 20873
>seq286
Length=43880
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || ||||||| ||| ||||||| | ||||| ||| ||| |
Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAA-CCATC 277
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || ||| | |||||| |||||| ||||||||||| || || || |||||
Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337
Query 25294 GCAAAGACTCATTT 25307
|||| | || ||||
Sbjct 338 GCAACGTCTGATTT 351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445049940633120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |