Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq67 129 8e-25
>seq67
Length=189510
Score = 129 bits (142), Expect = 8e-25
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424
|| |||| || |||||||| | | ||| || || || | | ||||||||| ||
Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462
Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484
||||||||||| |||| |||||||||||||| ||| | ||| | |||| | ||
Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 41402
Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544
|||||||| |||||||||| ||| || ||| || ||||| ||||| || || || |||
Sbjct 41401 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 41342
Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT 68585
|| | ||| | | ||||| | ||||||||||| |||||
Sbjct 41341 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 41301
Score = 109 bits (120), Expect = 8e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575
||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| |||
Sbjct 40017 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 39958
Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635
||| | | || | | || || ||||| |||||||| || ||||| || || |||
Sbjct 39957 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 39898
Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695
| ||||| || || |||||||| ||||| || ||||| || ||||| || |
Sbjct 39897 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 39838
Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728
|| || | ||||| ||||| | ||| | |||
Sbjct 39837 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 39805
Score = 89.7 bits (98), Expect = 7e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|||||| | || || || || || || |||||| ||||| |||||||||||||||||
Sbjct 40278 ATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 40219
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
||| | || || || || ||||| | |||||||| || || |||||||| |||||
Sbjct 40218 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGA 40159
Query 69435 TTCGATAAT 69443
|| |||||
Sbjct 40158 CTCAATAAT 40150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686840186397240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |