Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq67 129 8e-25 >seq67 Length=189510 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 || |||| || |||||||| | | ||| || || || | | ||||||||| || Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||||||||| |||| |||||||||||||| ||| | ||| | |||| | || Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 41402 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 |||||||| |||||||||| ||| || ||| || ||||| ||||| || || || ||| Sbjct 41401 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 41342 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT 68585 || | ||| | | ||||| | ||||||||||| ||||| Sbjct 41341 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 41301 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| ||| Sbjct 40017 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 39958 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | || | | || || ||||| |||||||| || ||||| || || ||| Sbjct 39957 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 39898 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct 39897 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 39838 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || | ||||| ||||| | ||| | ||| Sbjct 39837 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 39805 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||| | || || || || || || |||||| ||||| ||||||||||||||||| Sbjct 40278 ATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 40219 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| | || || || || ||||| | |||||||| || || |||||||| ||||| Sbjct 40218 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGA 40159 Query 69435 TTCGATAAT 69443 || ||||| Sbjct 40158 CTCAATAAT 40150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686840186397240