Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22 150 1e-31 >seq22 Length=309055 Score = 150 bits (166), Expect = 1e-31 Identities = 237/334 (71%), Gaps = 13/334 (4%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| |||||||| ||||| || | || ||||| | ||| ||||| || ||||||||| Sbjct 282584 CGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCAAATTGCC 282525 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 ||||||||| | ||||| ||||||||||| || |||| || || |||||| ||| Sbjct 282524 ATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGAT--- 282468 Query 44024 CACGAGAAGCATCGAT----TGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATA 44078 | | | ||| | ||| |||| || ||||| || | || | | |||| | || | | Sbjct 282467 CCGGTGGAGCGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TGAAGAAAA 282410 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTG 44135 | ||||||||||| | ||||| | | | | | ||| | ||||| | | Sbjct 282409 AGGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGG 282350 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 ||||||| |||| ||| ||||||||||||||||| || || ||| | || || |||| Sbjct 282349 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGT 282290 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 | || || || || ||||||| || |||||||| Sbjct 282289 TGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTT 282256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||| || ||||||||| |||||| ||||||| ||||| |||||||| |||| Sbjct 281833 AAAATCCGTTCGACTTTATGGAATTGATTTCGCTGGAAGGTAAAACGAACTTTTTCGAAA 281774 Query 44553 AACGCGTTGGAGAATATCAG 44572 ||||||| || ||||| ||| Sbjct 281773 AACGCGTCGGCGAATACCAG 281754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397417291635955