Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq286 96.9 3e-15 seq351 91.5 1e-13 seq1723 87.8 2e-12 seq22 84.2 2e-11 >seq286 Length=43880 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| ||||| |||||||| || || | ||||||||||| || || Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||||| || ||| ||||| ||||| || | ||| || ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 22925 AGAGTTTTCACAAATATCTGCAT 22903 >seq351 Length=21764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| ||||| |||||||| || || | ||||||||||| || || Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||||| || ||| ||||| ||||| || | ||| || ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || | || | ||||||||||||||| || | ||||||||||| || ||| Sbjct 20601 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 20542 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||||| |||||| || || | | ||| ||||| | |||||| | ||| || || Sbjct 20541 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 20482 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||| || ||||| |||||||| Sbjct 20481 AGAGTCTTAACAAAAATTTGCAT 20459 >seq1723 Length=770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || | || | ||||||||||||||| || | ||||||||||| || ||| Sbjct 363 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 304 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||||| |||||| || || | | ||| ||||| | |||||| | ||| || || Sbjct 303 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 244 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||| || ||||| |||||||| Sbjct 243 AGAGTCTTAACAAAAATTTGCAT 221 >seq22 Length=309055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316 ||| ||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||| | Sbjct 281753 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCAATT 281812 Query 108317 TCATAAAATGAAAGGGATT 108335 |||||| | || ||||| Sbjct 281813 CCATAAAGTCGAACGGATT 281831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424893015505992