Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq286 96.9 3e-15
seq351 91.5 1e-13
seq1723 87.8 2e-12
seq22 84.2 2e-11
>seq286
Length=43880
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCAT 22903
>seq351
Length=21764
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || | || | ||||||||||||||| || | ||||||||||| || |||
Sbjct 20601 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 20542
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||||| || || | | ||| ||||| | |||||| | ||| || ||
Sbjct 20541 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 20482
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
||||| || ||||| ||||||||
Sbjct 20481 AGAGTCTTAACAAAAATTTGCAT 20459
>seq1723
Length=770
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || | || | ||||||||||||||| || | ||||||||||| || |||
Sbjct 363 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 304
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||||| || || | | ||| ||||| | |||||| | ||| || ||
Sbjct 303 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 244
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
||||| || ||||| ||||||||
Sbjct 243 AGAGTCTTAACAAAAATTTGCAT 221
>seq22
Length=309055
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316
||| ||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||| |
Sbjct 281753 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCAATT 281812
Query 108317 TCATAAAATGAAAGGGATT 108335
|||||| | || |||||
Sbjct 281813 CCATAAAGTCGAACGGATT 281831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424893015505992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |