Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq67 91.5 2e-13
seq22 84.2 2e-11
>seq67
Length=189510
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|||| |||||||||||| || || || |||||||||||||| ||||| | |||||
Sbjct 41482 GTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGAT 41423
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| || || || | |||| | | ||| || || | ||||||||| ||||| |||
Sbjct 41422 GTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATG 41363
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362
| || || | || || |||||||| ||||| | ||||| | ||| |||||
Sbjct 41362 AATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 41310
>seq22
Length=309055
Score = 84.2 bits (92), Expect = 2e-11
Identities = 195/289 (67%), Gaps = 5/289 (2%)
Strand=Plus/Minus
Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886
|||| ||||| | |||| ||| ||||||| | | || ||||||| ||| |
Sbjct 282514 TCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTG 282455
Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945
| ||||||| || || ||||| | || || || || |||| ||||| |||||
Sbjct 282454 ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGC-GTGAAGAAAAAGGCAGACTGGGCT 282396
Query 59946 ATGCAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002
||| ||||| || || || | ||||| ||||| | | || || |||
Sbjct 282395 TTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCT 282336
Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062
|| ||||| || ||||| || ||| ||| | ||||||||| | |||||||| |||
Sbjct 282335 GTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGC 282276
Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
|| ||||| || ||| ||| |||||||||||| || || |||||||
Sbjct 282275 CTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGG 282227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548470009229040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |