Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq351 118 1e-21
seq286 118 1e-21
seq1723 113 5e-20
seq22 113 5e-20
seq542 105 8e-18
seq3254 96.9 4e-15
seq50 93.3 5e-14
seq4 82.4 9e-11
>seq351
Length=21764
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || |||||||| || || || || || || |||||||| || || || |
Sbjct 18929 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 18988
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| |||| |||||| |||||||||||| || ||||||||||| || || ||
Sbjct 18989 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 19048
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| ||||| ||||||||||||||| ||
Sbjct 19049 ACAACGTCTGATTTTTGCTGGTAAGTAA 19076
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || || || ||
Sbjct 21023 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 21082
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 21083 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 21142
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||||| |||||||||||||
Sbjct 21143 GCAACGTCTGATTTTTGCTGGTA 21165
Score = 113 bits (124), Expect = 5e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||| || || || || ||| | || || || ||
Sbjct 19895 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19954
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | |||||||| || || |||||||||||||| || ||
Sbjct 19955 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 20014
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||||||||
Sbjct 20015 ACAACGTTTGATTTTTGCTGGTAAGCA 20041
Score = 113 bits (124), Expect = 5e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||| || || || || ||| | || || || ||
Sbjct 21588 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 21647
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | ||||| || || || |||||||||||||| || ||
Sbjct 21648 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 21707
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||||||||
Sbjct 21708 ACAACGTTTGATTTTTGCTGGTAAGCA 21734
Score = 109 bits (120), Expect = 6e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || |||||||| || || || | || || || ||
Sbjct 20174 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATC 20233
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | ||||| ||||| ||||| |||||||| || || ||
Sbjct 20234 TGATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 20293
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||| ||| | ||||||||||||||| ||
Sbjct 20294 GCAACGTTTGATTTTTGCTGGTAAGTAA 20321
Score = 109 bits (120), Expect = 6e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||| || || || || ||| | || || || ||
Sbjct 20458 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20517
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | |||||||| || || ||||||||||| || || ||
Sbjct 20518 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20577
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|||||| | || |||||||||||| ||
Sbjct 20578 ACAGCGTTTGATATTTGCTGGTAAGTAA 20605
Score = 109 bits (120), Expect = 6e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || || || ||
Sbjct 21306 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 21365
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || ||
Sbjct 21366 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 21425
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||| ||| | ||||||||||||||| ||
Sbjct 21426 GCAACGTTTGATTTTTGCTGGTAAGTAA 21453
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || |||||||| || || || | || || || ||
Sbjct 20740 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 20799
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | |||||||| || || ||||||||||| ||||| ||
Sbjct 20800 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 20859
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||||| |||||||||||||
Sbjct 20860 GCAACGTCTGATTTTTGCTGGTA 20882
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || ||| | || || || || ||||| ||||| |||||| |
Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || || ||||| ||||| || || ||||| || || ||
Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
||||| || ||||||||||||| ||
Sbjct 19382 CAGCGGCTTATTTTTGCTGGTATGC 19406
>seq286
Length=43880
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || ||||| ||
Sbjct 24147 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATC 24206
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 24207 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 24266
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||||| |||||||||||||
Sbjct 24267 GCAACGTCTGATTTTTGCTGGTA 24289
Score = 114 bits (126), Expect = 1e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || || || |||||||| || || || |
Sbjct 22902 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 22961
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| |||| |||||| |||||||||||| || ||||||||||| || || ||
Sbjct 22962 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 23021
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| ||||| ||||||||||||||| ||
Sbjct 23022 ACAACGTCTGATTTTTGCTGGTAAGTAA 23049
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || || || ||
Sbjct 24432 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 24491
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 24492 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 24551
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||||| |||||||||||||
Sbjct 24552 GCAACGTCTGATTTTTGCTGGTA 24574
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| || ||||| || || || || | || || || ||
Sbjct 25278 AATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATC 25337
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||| ||| |||| | || ||||| || |||||||||||||||||||| ||
Sbjct 25338 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 25397
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
|||||||| |||||||||||||
Sbjct 25398 ACAGCGTCTGATTTTTGCTGGTA 25420
Score = 113 bits (124), Expect = 5e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||| || || || || ||| | || || || ||
Sbjct 24999 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 25058
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | |||||||| || || ||||||||||| || || ||
Sbjct 25059 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 25118
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||||||||
Sbjct 25119 ACAACGTTTGATTTTTGCTGGTAAGCA 25145
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||| || || || || ||| | || || || ||
Sbjct 23868 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 23927
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | |||||||| || || ||||||||||| || || ||
Sbjct 23928 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 23987
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||||||||
Sbjct 23988 ACAACGTTTGATTTTTGCTGGTAAGCA 24014
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || |||||||| || || || | || || || ||
Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | |||||||| || || ||||||||||| ||||| ||
Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||||| |||||||||||||
Sbjct 338 GCAACGTCTGATTTTTGCTGGTA 360
Score = 105 bits (116), Expect = 8e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || || || ||
Sbjct 24717 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 24776
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || ||
Sbjct 24777 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 24836
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| ||| | ||||||||||||||| ||
Sbjct 24837 ACAACGTTTGATTTTTGCTGGTAAGTAA 24864
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || ||| | || || || || ||||| ||||| |||||| |
Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || || ||||| ||||| || || || || ||||| ||
Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
||||| || ||||||||||||| ||
Sbjct 23355 CAGCGGCTTATTTTTGCTGGTATGC 23379
>seq1723
Length=770
Score = 113 bits (124), Expect = 5e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||| || || || || ||| | || || || ||
Sbjct 502 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 561
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | |||||||| || || |||||||||||||| || ||
Sbjct 562 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 621
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||||||||
Sbjct 622 ACAACGTTTGATTTTTGCTGGTAAGCA 648
Score = 109 bits (120), Expect = 6e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||| || || || || ||| | || || || ||
Sbjct 220 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 279
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| |||| | |||||||| || || ||||||||||| || || ||
Sbjct 280 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 339
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|||||| | || |||||||||||| ||
Sbjct 340 ACAGCGTTTGATATTTGCTGGTAAGTAA 367
>seq22
Length=309055
Score = 113 bits (124), Expect = 5e-20
Identities = 186/268 (69%), Gaps = 3/268 (1%)
Strand=Plus/Minus
Query 64582 CTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATA 64641
||| |||| |||| | | || ||||| || ||| ||| ||||||| || ||
Sbjct 282494 CTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATC 282435
Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698
||||| | || || | |||||||| || ||||| | || ||||| | |||
Sbjct 282434 GAGACCATTCCGTGCGTGAAGAAAAAGGCAGACTGGGCTTTGCGCTGGATCGGTGACCGT 282375
Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758
|||| | ||| | | ||| | | || || || ||| ||||| |||||||||||
Sbjct 282374 CAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCC 282315
Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818
|| ||| || ||||||||| | |||||||| ||||||||||| ||| || ||||
Sbjct 282314 GGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTC 282255
Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGG 64846
||||||||||||||||| |||||||
Sbjct 282254 AGCAACGAGCTGATCTCTCGTGACGAGG 282227
>seq542
Length=5403
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || |||||||| || || || | || || || ||
Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | |||||||| || || ||||||||||| ||||| ||
Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||||| |||||||||||||
Sbjct 338 GCAACGTCTGATTTTTGCTGGTA 360
>seq3254
Length=450
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||||||||| || || || | || || || ||
Sbjct 412 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 353
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || ||
Sbjct 352 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 293
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
|| ||| | |||||||||||||
Sbjct 292 ACAACGTTTGATTTTTGCTGGTA 270
>seq50
Length=223599
Score = 93.3 bits (102), Expect = 5e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || || || ||||| ||||| || || ||||| || || || ||||| ||
Sbjct 2237 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 2178
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | |||| | || |||||||||||| ||||| || |||||||| ||
Sbjct 2177 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 2118
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548
||||| | |||| ||||| |||||
Sbjct 2117 CAGCAAAGATTAATCTTTGCAGGTAA 2092
>seq4
Length=582728
Score = 82.4 bits (90), Expect = 9e-11
Identities = 89/117 (76%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 27394 AATATTACTATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452
|||||| | || |||||||| ||||| || || || || || ||||| || ||| | ||
Sbjct 336477 AATATTTATTTAGATGCAAATATTTGTGAAAACCCTAACAGGAAAGACCATCACTTTGGA 336418
Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| ||| | ||||| ||| ||| ||||||||||||||||||||||||| ||
Sbjct 336417 AGTGGAGCCTTCTGATACAATTCAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGG 336361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570253433119920
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