Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq351 118 1e-21 seq286 118 1e-21 seq1723 113 5e-20 seq22 113 5e-20 seq542 105 8e-18 seq3254 96.9 4e-15 seq50 93.3 5e-14 seq4 82.4 9e-11 >seq351 Length=21764 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || || || || || |||||||| || || || | Sbjct 18929 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 18988 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 18989 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 19048 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 19049 ACAACGTCTGATTTTTGCTGGTAAGTAA 19076 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 21023 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 21082 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 21083 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 21142 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 21143 GCAACGTCTGATTTTTGCTGGTA 21165 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 19895 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19954 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || |||||||||||||| || || Sbjct 19955 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 20014 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 20015 ACAACGTTTGATTTTTGCTGGTAAGCA 20041 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || || || || ||| | || || || || Sbjct 21588 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 21647 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | ||||| || || || |||||||||||||| || || Sbjct 21648 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 21707 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 21708 ACAACGTTTGATTTTTGCTGGTAAGCA 21734 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || |||||||| || || || | || || || || Sbjct 20174 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATC 20233 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | ||||| ||||| ||||| |||||||| || || || Sbjct 20234 TGATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 20293 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| ||| | ||||||||||||||| || Sbjct 20294 GCAACGTTTGATTTTTGCTGGTAAGTAA 20321 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || || || || ||| | || || || || Sbjct 20458 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20517 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 20518 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20577 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| | || |||||||||||| || Sbjct 20578 ACAGCGTTTGATATTTGCTGGTAAGTAA 20605 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 21306 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 21365 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 21366 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 21425 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| ||| | ||||||||||||||| || Sbjct 21426 GCAACGTTTGATTTTTGCTGGTAAGTAA 21453 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || |||||||| || || || | || || || || Sbjct 20740 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 20799 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || ||||||||||| ||||| || Sbjct 20800 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 20859 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 20860 GCAACGTCTGATTTTTGCTGGTA 20882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || ||||| || || || Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 19382 CAGCGGCTTATTTTTGCTGGTATGC 19406 >seq286 Length=43880 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || ||||| || Sbjct 24147 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATC 24206 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 24207 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 24266 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 24267 GCAACGTCTGATTTTTGCTGGTA 24289 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 22902 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 22961 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 22962 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 23021 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 23022 ACAACGTCTGATTTTTGCTGGTAAGTAA 23049 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 24432 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 24491 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 24492 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 24551 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 24552 GCAACGTCTGATTTTTGCTGGTA 24574 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || ||||| || || || || | || || || || Sbjct 25278 AATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATC 25337 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| ||| |||| | || ||||| || |||||||||||||||||||| || Sbjct 25338 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 25397 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| ||||||||||||| Sbjct 25398 ACAGCGTCTGATTTTTGCTGGTA 25420 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || || || || ||| | || || || || Sbjct 24999 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 25058 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 25059 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 25118 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 25119 ACAACGTTTGATTTTTGCTGGTAAGCA 25145 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 23868 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 23927 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 23928 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 23987 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 23988 ACAACGTTTGATTTTTGCTGGTAAGCA 24014 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || |||||||| || || || | || || || || Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || ||||||||||| ||||| || Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 338 GCAACGTCTGATTTTTGCTGGTA 360 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 24717 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 24776 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 24777 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 24836 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||| | ||||||||||||||| || Sbjct 24837 ACAACGTTTGATTTTTGCTGGTAAGTAA 24864 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || || || ||||| || Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 23355 CAGCGGCTTATTTTTGCTGGTATGC 23379 >seq1723 Length=770 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 502 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 561 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || |||||||||||||| || || Sbjct 562 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 621 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 622 ACAACGTTTGATTTTTGCTGGTAAGCA 648 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || || || || ||| | || || || || Sbjct 220 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 279 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 280 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 339 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| | || |||||||||||| || Sbjct 340 ACAGCGTTTGATATTTGCTGGTAAGTAA 367 >seq22 Length=309055 Score = 113 bits (124), Expect = 5e-20 Identities = 186/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 64582 CTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATA 64641 ||| |||| |||| | | || ||||| || ||| ||| ||||||| || || Sbjct 282494 CTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATC 282435 Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698 ||||| | || || | |||||||| || ||||| | || ||||| | ||| Sbjct 282434 GAGACCATTCCGTGCGTGAAGAAAAAGGCAGACTGGGCTTTGCGCTGGATCGGTGACCGT 282375 Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758 |||| | ||| | | ||| | | || || || ||| ||||| ||||||||||| Sbjct 282374 CAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCC 282315 Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818 || ||| || ||||||||| | |||||||| ||||||||||| ||| || |||| Sbjct 282314 GGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTC 282255 Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGG 64846 ||||||||||||||||| ||||||| Sbjct 282254 AGCAACGAGCTGATCTCTCGTGACGAGG 282227 >seq542 Length=5403 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || |||||||| || || || | || || || || Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || ||||||||||| ||||| || Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 338 GCAACGTCTGATTTTTGCTGGTA 360 >seq3254 Length=450 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 412 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 353 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 352 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 293 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 || ||| | ||||||||||||| Sbjct 292 ACAACGTTTGATTTTTGCTGGTA 270 >seq50 Length=223599 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| ||||| || || ||||| || || || ||||| || Sbjct 2237 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 2178 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | |||| | || |||||||||||| ||||| || |||||||| || Sbjct 2177 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 2118 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||| ||||| ||||| Sbjct 2117 CAGCAAAGATTAATCTTTGCAGGTAA 2092 >seq4 Length=582728 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 27394 AATATTACTATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452 |||||| | || |||||||| ||||| || || || || || ||||| || ||| | || Sbjct 336477 AATATTTATTTAGATGCAAATATTTGTGAAAACCCTAACAGGAAAGACCATCACTTTGGA 336418 Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || ||| | ||||| ||| ||| ||||||||||||||||||||||||| || Sbjct 336417 AGTGGAGCCTTCTGATACAATTCAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGG 336361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570253433119920