Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq351 114 1e-20
seq286 114 1e-20
seq1723 95.1 1e-14
seq1209 82.4 7e-11
seq50 82.4 7e-11
>seq351
Length=21764
Score = 114 bits (126), Expect = 1e-20
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | |||||||| ||||||||||| ||
Sbjct 18930 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 18989
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 18990 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19049
Query 27108 CAGCGT 27113
|| |||
Sbjct 19050 CAACGT 19055
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381
Query 27108 CAGCG 27112
|||||
Sbjct 19382 CAGCG 19386
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| || || || | || ||| | ||||| ||||| ||
Sbjct 20459 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20518
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||||||||| ||||| || || ||||| ||||||
Sbjct 20519 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 20578
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137
|||||||| |||| || || || |||||
Sbjct 20579 CAGCGTTTGATATTTGCTGGTAAGTAATTG 20608
>seq286
Length=43880
Score = 114 bits (126), Expect = 1e-20
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | |||||||| ||||||||||| ||
Sbjct 22903 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 22962
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 22963 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 23022
Query 27108 CAGCGT 27113
|| |||
Sbjct 23023 CAACGT 23028
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354
Query 27108 CAGCG 27112
|||||
Sbjct 23355 CAGCG 23359
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || || || | || ||| | ||||| ||||| ||
Sbjct 25000 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 25059
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| |||||||||||| ||||| || || ||||| ||||||
Sbjct 25060 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 25119
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136
|| ||||| || | || || || || ||
Sbjct 25120 CAACGTTTGATTTTTGCTGGTAAGCAGTT 25148
>seq1723
Length=770
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| || || || | || ||| | ||||| ||||| ||
Sbjct 221 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 280
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||||||||| ||||| || || ||||| ||||||
Sbjct 281 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 340
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137
|||||||| |||| || || || |||||
Sbjct 341 CAGCGTTTGATATTTGCTGGTAAGTAATTG 370
>seq1209
Length=1128
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | ||||| || || ||
Sbjct 180 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 239
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | || ||| ||||||||||| || |||||||| ||||| |||||
Sbjct 240 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 299
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 300 CAACGATTGATAT 312
>seq50
Length=223599
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | ||||| || || ||
Sbjct 949 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 890
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | || ||| ||||||||||| || |||||||| ||||| |||||
Sbjct 889 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 830
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 829 CAACGATTGATAT 817
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | ||||| || || ||
Sbjct 1520 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 1461
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | || ||| ||||||||||| || |||||||| ||||| |||||
Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 1400 CAACGATTGATAT 1388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434874957088320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |