Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq351 95.1 9e-15 seq286 95.1 9e-15 seq50 84.2 2e-11 >seq351 Length=21764 Score = 95.1 bits (104), Expect = 9e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 19166 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 19225 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | |||||||||||||||||||| || || Sbjct 19226 AGCACGCTTCATTTGGTTTTGCGTTTGCGCGGTGG 19260 >seq286 Length=43880 Score = 95.1 bits (104), Expect = 9e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 23139 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 23198 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | |||||||||||||||||||| || || Sbjct 23199 AGCACGCTTCATTTGGTTTTGCGTTTGCGCGGTGG 23233 >seq50 Length=223599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | || ||||| ||||| ||||| ||||| |||||| Sbjct 1325 GGGAAACAACTGGAAGATGGTCGTACGTTATCCGACTACAATATCCAGAAAGAAAGCACT 1266 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 1265 TTGCATTTGGTGCTGCGTTTACGTGGCGG 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355827742449657