Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq50 100 7e-16
seq351 86.0 1e-11
>seq50
Length=223599
Score = 100 bits (110), Expect = 7e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| ||||| ||||| | | ||| || |||||||||| |||||||| ||||| || ||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || |||||||||||||| || |||||| || || || || || ||||| ||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || | ||||||
Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234
>seq351
Length=21764
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || || || | ||||| || || || |||| ||||||||| ||||| || ||
Sbjct 20318 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 20259
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|||||| ||||| || || ||||| ||| || || | ||||| || || || ||
Sbjct 20258 CCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGT 20199
Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115
||||||||| || || | ||||||
Sbjct 20198 GAGAGTCTTAACGAAAATTTGCATT 20174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159033320584715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |