Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq67 143 4e-29
>seq67
Length=189510
Score = 143 bits (158), Expect = 4e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832
|| |||| || |||||||| | | ||| || || || | | ||||||||| |||
Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462
Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892
||||| |||||| |||| |||||||||||||| ||||| ||| | |||| | ||
Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 41402
Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952
|||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| |||
Sbjct 41401 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 41342
Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 41341 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 41300
Score = 134 bits (148), Expect = 2e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| |||
Sbjct 40017 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 39958
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||| || || || | | || || ||||| || |||||||||||||| || ||| |||
Sbjct 39957 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 39898
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
| |||||||| || | |||||| ||||| |||||||| || ||||| || |
Sbjct 39897 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 39838
Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130
|| || | ||||| ||||| | |||
Sbjct 39837 TATGTCTGCGTGCCAAGGTTCCAAATA 39811
Score = 114 bits (126), Expect = 2e-20
Identities = 186/261 (71%), Gaps = 10/261 (4%)
Strand=Plus/Minus
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343
||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || |
Sbjct 40866 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 40807
Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402
||||||| ||| || | ||| || || || || || |||||| || | || |||
Sbjct 40806 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAA 40748
Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459
|| ||| || || | ||||| || ||||| ||||| |||||||| | |||| | |
Sbjct 40747 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 40688
Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518
|||| || ||||||||||| | | | |||||| ||||| || ||||| || ||
Sbjct 40687 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTAC 40632
Query 77519 TCCAATACCAATAGGTCTATG 77539
||||||||||| |||| |||
Sbjct 40631 ACCAATACCAATTGGTCGATG 40611
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182
|| |||||||||||| || | || | |||||| || | ||| || || | ||| ||
Sbjct 41099 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 41040
Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242
||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| ||
Sbjct 41039 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 40980
Query 77243 ACTATTTCTGAGACCAT 77259
|||||| |||||||
Sbjct 40979 CGAATTTCTCAGACCAT 40963
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 77720 GGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779
|| |||||| | || ||||| || || || |||||| ||||| ||||||||||| ||
Sbjct 40281 GGAATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTG 40222
Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839
|| ||| ||||||| | || || || | |||||||| || ||||||||||| ||
Sbjct 40221 ATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTG 40162
Query 77840 TGATTCGATAAT 77851
|| || |||||
Sbjct 40161 AGACTCAATAAT 40150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694599411270240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |