Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq67 152 7e-32
>seq67
Length=189510
Score = 152 bits (168), Expect = 7e-32
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
|| |||| ||||||||||| | | |||||| || || | | ||||||||| |||
Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| |||||| |||| |||||||||||||| ||| | ||| | |||| ||||
Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 41402
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| |||
Sbjct 41401 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 41342
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 41341 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 41300
Score = 123 bits (136), Expect = 4e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570
||||| |||||| ||||| ||||| | ||| |||| ||||||||||||| || |||
Sbjct 40025 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 39966
Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630
|||| |||||| || || || | | || || ||||| || |||||||||||||| ||
Sbjct 39965 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 39906
Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690
||| ||| | |||||||| || |||||| ||||| |||||||| || ||
Sbjct 39905 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 39846
Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731
|| || | || || | ||||| ||||| | ||| | |||
Sbjct 39845 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 39805
Score = 114 bits (126), Expect = 2e-20
Identities = 196/280 (70%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938
||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || |
Sbjct 40866 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 40807
Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998
| ||||| ||| || | ||| || ||||| | || || || || | |||||||
Sbjct 40806 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAAC 40747
Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055
| ||||||||| | ||||| || ||||| ||||| |||||||| | |||| ||
Sbjct 40746 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 40687
Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115
|||| || | |||| ||||| | | | |||||| ||||| || | ||| || || |
Sbjct 40686 CTTCG-GATT--CAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 40630
Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155
|||||||||| |||| ||| | || || || |||| ||
Sbjct 40629 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 40590
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
|||||||||||| || | || | ||||| || | ||| || || | ||| || ||
Sbjct 41096 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 41037
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||||||||| ||||||||||| || || || ||||||||||| || |||| ||| ||
Sbjct 41036 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 40977
Query 75841 ATTTCTGAGACCAT 75854
|||||| |||||||
Sbjct 40976 ATTTCTCAGACCAT 40963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712863186765120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |