Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3254 96.9 7e-15
seq1723 95.1 3e-14
seq351 95.1 3e-14
seq286 95.1 3e-14
seq542 93.3 9e-14
seq50 86.0 1e-11
>seq3254
Length=450
Score = 96.9 bits (106), Expect = 7e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || ||||| || ||||| || || || || ||
Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 392 GTCTTAACGAAAATTTGCATT 412
Score = 84.2 bits (92), Expect = 5e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
||||||||||| || ||||| || ||||| || || || || ||||||| | ||
Sbjct 1 AAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCT 60
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|| || || || | ||| ||||| | |||||||| || || || | ||||||||||||
Sbjct 61 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAA 120
Query 283092 ATCTGCATT 283100
|| ||||||
Sbjct 121 ATTTGCATT 129
>seq1723
Length=770
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 529
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||||| || ||||||
Sbjct 528 GTAAGGGTCTTAACGAAAATTTGCATT 502
>seq351
Length=21764
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19922
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||||| || ||||||
Sbjct 19921 GTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||| |||||| || || ||||| ||||| || ||||| || || ||
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 20760 GTCTTAACGAAAATTTGCATT 20740
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101
| ||| || || |||||||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCATTT 18928
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct 21449 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 21390
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 21389 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 21330
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 21329 AGAGTCTTAACAAAAATTTGCATT 21306
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 21734 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 21675
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 21674 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 21615
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | |||||||| || || ||||||
Sbjct 21614 GTAAGGGTCTTAACAAAAATTTGCATT 21588
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||| || | || || || || || | ||| ||||| | ||||| || || || ||
Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| |||||||||||| || ||||||
Sbjct 20197 AGAGTCTTAACGAAAATTTGCATT 20174
>seq286
Length=43880
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTTC 22899
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 24014 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 23955
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 23954 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 23895
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||||| || ||||||
Sbjct 23894 GTAAGGGTCTTAACGAAAATTTGCATT 23868
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||| |||||| || || ||||| ||||| || ||||| || || ||
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
Score = 93.3 bits (102), Expect = 9e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| || ||||| || || || ||
Sbjct 24860 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 24801
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 24800 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 24741
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 24740 AGAGTCTTAACAAAAATTTGCATT 24717
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 25145 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 25086
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 25085 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 25026
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | |||||||| || || ||||||
Sbjct 25025 GTAAGGGTCTTAACAAAAATTTGCATT 24999
>seq542
Length=5403
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||| |||||| || || ||||| ||||| || ||||| || || ||
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
>seq50
Length=223599
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 2150
Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|||||| | | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 2151 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 2210
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||||||||||||
Sbjct 2211 AAGTGTCTTCACGAATATCTGCAT 2234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046632029934114
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