Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3254 96.9 7e-15 seq1723 95.1 3e-14 seq351 95.1 3e-14 seq286 95.1 3e-14 seq542 93.3 9e-14 seq50 86.0 1e-11 >seq3254 Length=450 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||||||||||||| || ||||| || ||||| || || || || || Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 392 GTCTTAACGAAAATTTGCATT 412 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| || ||||| || ||||| || || || || ||||||| | || Sbjct 1 AAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCT 60 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || || || || | ||| ||||| | |||||||| || || || | |||||||||||| Sbjct 61 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAA 120 Query 283092 ATCTGCATT 283100 || |||||| Sbjct 121 ATTTGCATT 129 >seq1723 Length=770 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 529 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 528 GTAAGGGTCTTAACGAAAATTTGCATT 502 >seq351 Length=21764 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19922 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 19921 GTAAGGGTCTTAACGAAAATTTGCATT 19895 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 20760 GTCTTAACGAAAATTTGCATT 20740 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101 | ||| || || ||||||||||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCATTT 18928 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| ||||||||||| || || ||||| || ||||| || || || || Sbjct 21449 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 21390 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 21389 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 21330 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||||||| || || |||||| Sbjct 21329 AGAGTCTTAACAAAAATTTGCATT 21306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 21734 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 21675 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 21674 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 21615 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||||| || || |||||| Sbjct 21614 GTAAGGGTCTTAACAAAAATTTGCATT 21588 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| ||||||||||| || || ||||| || ||||| || || || || Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 |||| || | || || || || || | ||| ||||| | ||||| || || || || Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 20197 AGAGTCTTAACGAAAATTTGCATT 20174 >seq286 Length=43880 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103 | ||| || || ||||||||||||||| Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTTC 22899 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 24014 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 23955 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 23954 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 23895 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 23894 GTAAGGGTCTTAACGAAAATTTGCATT 23868 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 238 GTCTTAACGAAAATTTGCATT 218 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 24860 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 24801 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 24800 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 24741 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||||||| || || |||||| Sbjct 24740 AGAGTCTTAACAAAAATTTGCATT 24717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 25145 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 25086 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 25085 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 25026 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||||| || || |||||| Sbjct 25025 GTAAGGGTCTTAACAAAAATTTGCATT 24999 >seq542 Length=5403 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 238 GTCTTAACGAAAATTTGCATT 218 >seq50 Length=223599 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | ||| || ||| ||||| || ||||| || || || ||| Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 2150 Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||| | | ||||| ||||| || | ||| ||||| || || || || || || || Sbjct 2151 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 2210 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | ||||| |||||||||||||| Sbjct 2211 AAGTGTCTTCACGAATATCTGCAT 2234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046632029934114