Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq50 102 2e-16
seq542 95.1 3e-14
seq351 95.1 3e-14
seq286 95.1 3e-14
seq3254 89.7 1e-12
seq1723 84.2 5e-11
>seq50
Length=223599
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| || || || |||||||| || || || || || |
Sbjct 2242 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 2183
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| |||||||||||||| || || ||| || |||||||| || ||||| || ||||
Sbjct 2182 AACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 2123
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 2122 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 2092
>seq542
Length=5403
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 222 CAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 281
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||| ||||| || || || ||||||
Sbjct 282 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 341
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 342 CGTCTGATTTTTGCTGG 358
>seq351
Length=21764
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 20744 CAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 20803
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||| ||||| || || || ||||||
Sbjct 20804 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 20863
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 20864 CGTCTGATTTTTGCTGG 20880
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || |||||||| || ||||| ||||| | || |||||| || ||
Sbjct 20178 CAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCTGAT 20237
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || ||||| || |||||||| || ||||| ||||||
Sbjct 20238 ACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAGCAA 20297
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 20298 CGTTTGATTTTTGCTGGTAA 20317
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 21310 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 21369
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| ||||||
Sbjct 21370 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAGCAA 21429
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 21430 CGTTTGATTTTTGCTGGTAA 21449
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 19265 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 19324
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| || || ||||| || ||
Sbjct 19325 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAACAG 19384
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 19385 CGGCTTATTTTTGCTGG 19401
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 21027 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 21086
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 21087 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 21146
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 21147 CGTCTGATTTTTGCTGG 21163
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || |||||||| || || | || || ||| || ||
Sbjct 19899 CAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTGAT 19958
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| ||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 19959 ACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAACAA 20018
Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067
|| | || || || || || |||
Sbjct 20019 CGTTTGATTTTTGCTGGTAAGCAG 20042
>seq286
Length=43880
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 222 CAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 281
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||| ||||| || || || ||||||
Sbjct 282 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 341
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 342 CGTCTGATTTTTGCTGG 358
Score = 91.5 bits (100), Expect = 4e-13
Identities = 110/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||||||||| || || ||||| || || || || ||||||
Sbjct 22900 AAAATGC---AGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAA 22956
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||||||||| || || || || || || |||||||| ||||| ||||| || ||
Sbjct 22957 CCCTCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 23016
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
|| || ||||| || || || || || ||
Sbjct 23017 GATCAACAACGTCTGATTTTTGCTGGTAA 23045
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 23238 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 23297
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| || || || ||
Sbjct 23298 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 23357
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 23358 CGGCTTATTTTTGCTGG 23374
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 24151 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCTGAT 24210
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 24211 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 24270
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 24271 CGTCTGATTTTTGCTGG 24287
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 24436 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 24495
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 24496 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 24555
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 24556 CGTCTGATTTTTGCTGG 24572
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 24721 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 24780
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 24781 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 24840
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 24841 CGTTTGATTTTTGCTGGTAA 24860
>seq3254
Length=450
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 125 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 66
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 65 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 6
Query 178044 CG 178045
||
Sbjct 5 CG 4
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 408 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 349
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 348 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 289
Query 178044 CG 178045
||
Sbjct 288 CG 287
>seq1723
Length=770
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || |||||||| || || | || || ||| || ||
Sbjct 506 CAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTGAT 565
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| ||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 566 ACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAACAA 625
Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067
|| | || || || || || |||
Sbjct 626 CGTTTGATTTTTGCTGGTAAGCAG 649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203607956357254
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |