Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq520 105 1e-17 seq365 102 1e-16 seq2483 100 4e-16 seq104 91.5 2e-13 >seq520 Length=13491 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || |||| | ||| || Sbjct 9325 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 9266 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 9265 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 9206 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 9205 GCAACGTCTGATTTTTGCTGG 9185 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || |||| | ||| || Sbjct 10175 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 10116 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 10115 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 10056 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 10055 GCAACGTCTGATTTTTGCTGG 10035 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || || |||| | ||| || Sbjct 9609 AATGCAAATTTTCGTTAAGACTCTTACTGGCAAAACGATCACCTTAGAAGTAGAACCATC 9550 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 9549 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 9490 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 9489 GCAACGTCTGATTTTTGCTGG 9469 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || || |||| | ||| || Sbjct 10459 AATGCAAATTTTCGTTAAGACTCTTACTGGCAAAACGATCACCTTAGAAGTAGAACCATC 10400 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 10399 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 10340 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 10339 GCAACGTCTGATTTTTGCTGG 10319 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| || Sbjct 9891 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 9832 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 9831 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 9772 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| | | || ||||| || || |||| Sbjct 9771 ACAGCGTTTGATATTTGCTGGTAAGTAATT 9742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| || Sbjct 10741 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 10682 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 10681 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 10622 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| | | || ||||| || || |||| Sbjct 10621 ACAGCGTTTGATATTTGCTGGTAAGTAATT 10592 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || |||||||| || || |||| | ||| || ||||||||| ||| ||||| Sbjct 11000 ACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGATACAATAGAGAATGTAAAAGGC 10941 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGG 124678 ||||||||||||||||| || || ||||| ||||| ||| | || |||||||| || Sbjct 10940 AAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAACGTCTGATTTTTGCTGG 10885 >seq365 Length=37953 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || || | || | ||| || Sbjct 17557 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 17498 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 17497 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 17438 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 17437 GCAACGTCTGATTTTTGCTGG 17417 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 27961 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 27902 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||||||| || ||||| ||||| Sbjct 27901 TGATACAATAGAAAATGTGAAAGGGAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 27842 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 |||| | | || ||||| || || Sbjct 27841 ACAACGTTTGATATTTGCTGGTAA 27818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| ||||| || ||||| || || | || | ||| || Sbjct 17274 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 17215 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | ||| ||| ||||||||||| || || || || || ||||| Sbjct 17214 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 17155 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 17154 ACAGCGTCTGATTTTTGCTGG 17134 >seq2483 Length=432 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 93 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 152 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 153 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 212 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 213 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 242 >seq104 Length=129113 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | |||||||| || || ||||||||||| |||| ||||| || Sbjct 102080 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 102139 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 102140 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 102199 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 102200 CAAAGATTAATCTTTGCAGGTAA 102222 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||| |||| || ||||| || || | || | || || Sbjct 103078 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 103137 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| ||||| |||||||||||||| ||||| || ||||||||||| Sbjct 103138 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 103197 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 103198 GCAACGATTGATATTTGCTGG 103218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755406498745600