Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq24 111 2e-19 seq316 109 6e-19 seq82 105 8e-18 seq123 104 3e-17 >seq24 Length=220534 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| || Sbjct 119464 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 119523 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 119524 ACTCACCACTATACTACCGAGGAT 119547 >seq316 Length=52316 Score = 109 bits (120), Expect = 6e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 60020 TTTTATGTAATCAGATAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGA 60079 ||| || |||| | | | || || |||| | ||| || ||| |||| |||| |||| Sbjct 35430 TTTAATTTAATTAAAAATTAAAAATTTAAACTATATAAATAATCAACTCCCCGGCCGGGA 35489 Query 60080 ATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 35490 ATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTATACTACCGAGGA 35547 >seq82 Length=138979 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 70896 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 70955 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 70956 TACTACCGAGGAT 70968 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 71593 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71652 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 71653 TACTACCGAGGAT 71665 >seq123 Length=120185 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 45262 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 45321 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 45322 TACTACCGAGGA 45333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571780131651760