Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq68 143 2e-29 seq365 91.5 1e-13 seq241 86.0 6e-12 >seq68 Length=159368 Score = 143 bits (158), Expect = 2e-29 Identities = 259/371 (70%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| || ||||||| |||||| | ||||| || ||||| | | || || || || || Sbjct 129388 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 129447 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| |||||||| || | ||||| || ||| | Sbjct 129448 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 129507 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911 || | ||| ||| || ||||||||||||||||| || || || ||| | Sbjct 129508 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 129562 Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970 || || ||||| ||| | | ||||| | || || | | | || ||| Sbjct 129563 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 129621 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | |||||||||| || || ||||| || |||||||| |||||||| ||| |||| Sbjct 129622 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 129681 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 129682 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 129741 Query 58091 GCGCGACGAGG 58101 || ||||||| Sbjct 129742 TCGTGACGAGG 129752 >seq365 Length=37953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 22438 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 22379 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 22378 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 22319 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 22318 CAACGTCTGATTTTTGCTGG 22299 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 28524 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 28465 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || || Sbjct 28464 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28405 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 28404 CAACGTTTGATTTTTGCTGGTAA 28382 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 17556 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17497 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | ||| || || ||||| | || || || ||| Sbjct 17496 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17437 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 17436 CAACGTCTGATTTTTGCTGG 17417 >seq241 Length=74255 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| || Sbjct 57688 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 57747 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 57748 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 57807 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | || || |||||||| || ||||||| Sbjct 57808 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 57842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 58067 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 58126 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 58127 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 58161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737191156640