Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq68 143 2e-29
seq365 91.5 1e-13
seq241 86.0 6e-12
>seq68
Length=159368
Score = 143 bits (158), Expect = 2e-29
Identities = 259/371 (70%), Gaps = 12/371 (3%)
Strand=Plus/Plus
Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
||| || ||||||| |||||| | ||||| || ||||| | | || || || || ||
Sbjct 129388 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 129447
Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856
| | ||||| ||||| || ||||| |||||||| || | ||||| || ||| |
Sbjct 129448 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 129507
Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911
|| | ||| ||| || ||||||||||||||||| || || || ||| |
Sbjct 129508 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 129562
Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970
|| || ||||| ||| | | ||||| | || || | | | || |||
Sbjct 129563 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 129621
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | |||||||||| || || ||||| || |||||||| |||||||| ||| ||||
Sbjct 129622 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 129681
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090
|| ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 129682 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 129741
Query 58091 GCGCGACGAGG 58101
|| |||||||
Sbjct 129742 TCGTGACGAGG 129752
>seq365
Length=37953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 22438 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 22379
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || |||
Sbjct 22378 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 22319
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 22318 CAACGTCTGATTTTTGCTGG 22299
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 28524 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 28465
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 28464 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 28405
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 28404 CAACGTTTGATTTTTGCTGGTAA 28382
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 17556 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17497
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | ||| || || ||||| | || || || |||
Sbjct 17496 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17437
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 17436 CAACGTCTGATTTTTGCTGG 17417
>seq241
Length=74255
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| ||
Sbjct 57688 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 57747
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
|| || ||| |||||||||||| || | ||| || || | ||| || |||||
Sbjct 57748 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 57807
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || | || || |||||||| || |||||||
Sbjct 57808 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 57842
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
||||||| | || || | ||||||||||| ||| | ||||||||| ||||| |||
Sbjct 58067 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 58126
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694
| ||||| |||||||| ||||| |||||||||||
Sbjct 58127 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 58161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445737191156640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |