Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq241 120 4e-22
>seq241
Length=74255
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851
||||||| || |||||||| | | ||| | || || | | ||||||||| ||
Sbjct 56109 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 56168
Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911
||||| ||||| |||| ||||| |||||||| || | ||| | ||| | ||
Sbjct 56169 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 56228
Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971
||||||||||||||||||| |||||| ||| || ||||| |||||||| || || |||
Sbjct 56229 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 56288
Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005
|| | ||||| ||||| | |||||||||||
Sbjct 56289 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 56322
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||||||||||||||| || | || | |||||| || | ||| || |||| ||| ||
Sbjct 56531 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 56590
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| |
Sbjct 56591 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 56650
Query 71262 ACTATTTCTAAGACCAT 71278
|||||| |||||||
Sbjct 56651 CGAATTTCTCAGACCAT 56667
Score = 100 bits (110), Expect = 4e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994
|||||| ||| ||||| || ||||| || | |||||||||||||||| || |||
Sbjct 57605 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 57664
Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054
|||| |||||| ||||| || | | | || ||||| || |||||||| ||||| ||
Sbjct 57665 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 57724
Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114
|| ||| | ||||| || || | || ||| ||||| |||||||| || ||
Sbjct 57725 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 57784
Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149
|| | | || || | ||||| |||||||| ||
Sbjct 57785 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 57819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671095223603920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |