Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq365 95.1 1e-14 seq520 89.7 5e-13 seq104 82.4 8e-11 >seq365 Length=37953 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 17415 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17474 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 17475 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17534 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 17535 GAGTCTTAACGAAAATTTGCAT 17556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | ||||| | |||||| ||||| | ||| | || || || ||| Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 29748 AGAGTTTTCACAAATATCTGCAT 29770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||| || || ||||| || || |||||||||||||| ||| || Sbjct 29297 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 29356 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | ||| | || || | || || ||||||| || | ||| || || |||| Sbjct 29357 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 29416 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 29417 ACGTTTTCACAAATATCTGCAT 29438 >seq520 Length=13491 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 9183 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9242 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 9243 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 9302 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 9303 GAGTCTTAACGAAAATTTGCAT 9324 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 10033 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10092 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 10093 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 10152 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 10153 GAGTCTTAACGAAAATTTGCAT 10174 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 9467 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 9526 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| ||||| || | Sbjct 9527 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 9586 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 9587 GAGTCTTAACGAAAATTTGCAT 9608 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 10317 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 10376 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| ||||| || | Sbjct 10377 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAA 10436 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 10437 GAGTCTTAACGAAAATTTGCAT 10458 >seq104 Length=129113 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | |||| ||||||||||| || || |||||||| || || |||||| Sbjct 102648 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 102589 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | ||| | ||| || | ||||||||||| | || | || || || || | Sbjct 102588 TTTTCACATTTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTA 102529 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 ||||||| || || || |||||| Sbjct 102528 ATGTTTTCACAAAAATCTGCATA 102506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506981177881440