Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq520 107 1e-18
seq365 105 5e-18
seq2483 93.3 3e-14
>seq520
Length=13491
Score = 107 bits (118), Expect = 1e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| |||||||||| ||||| || ||||||||| ||||| || |
Sbjct 9742 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 9801
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||||| || ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 9802 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 9861
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 9862 CCAGTAAGAGTCTTAACAAAAATTTGCAT 9890
Score = 107 bits (118), Expect = 1e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| |||||||||| ||||| || ||||||||| ||||| || |
Sbjct 10592 AATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 10651
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||||| || ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 10652 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 10711
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 10712 CCAGTAAGAGTCTTAACAAAAATTTGCAT 10740
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||| ||||| || ||||||||
Sbjct 9185 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9244
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 9245 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 9304
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 9305 GTCTTAACGAAAATTTGCAT 9324
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||| ||||| || ||||||||
Sbjct 9469 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 9528
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 9529 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 9588
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 9589 GTCTTAACGAAAATTTGCAT 9608
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||| ||||| || ||||||||
Sbjct 10035 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10094
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 10095 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 10154
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 10155 GTCTTAACGAAAATTTGCAT 10174
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||| ||||| || ||||||||
Sbjct 10319 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 10378
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 10379 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCAGTAAGA 10438
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 10439 GTCTTAACGAAAATTTGCAT 10458
>seq365
Length=37953
Score = 105 bits (116), Expect = 5e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| |||||||||||||||| || ||||||||||||||| || ||||||
Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| || ||| ||||||| ||||| ||| || || || || |||||||| || ||
Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||||||||||||
Sbjct 27938 AGGGTCTTAACAAAAATTTGCAT 27960
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 28376 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 28435
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||||| |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 28436 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 28495
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || || |||||||||||
Sbjct 28496 CCGGTAAGAGTCTTAACGAAAATTTGCAT 28524
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 17537 GTCTTAACGAAAATTTGCAT 17556
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || |||||||||||| || || |||||||
Sbjct 22299 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22358
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 22359 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 22418
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 22419 GTCTTAACAAAAATTTGCAT 22438
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 29748 AGAGTTTTCACAAATATCTGCATTTT 29773
Score = 93.3 bits (102), Expect = 3e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || |||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 28094 AATTACTTACCAGCGAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 28153
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | || ||| |||| || ||||| ||| || || || || ||||||||
Sbjct 28154 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTT 28213
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||||||||||||
Sbjct 28214 CCAGTAAGGGTCTTAACAAAAATTTGCAT 28242
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || |||||||||||| || || |||||||
Sbjct 27533 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 27592
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| ||| || || || || |||||||| || || ||
Sbjct 27593 TTTACATTCTCTATTGTATCAGATGGTTCCACCTCCAATGTGATGGTTTTGCCAGTGAGG 27652
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 27653 GTCTTGACAAAAATTTGCAT 27672
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || ||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 22850 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 22909
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | || ||| |||| || ||||| |||||| || || || || |||||
Sbjct 22910 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 22969
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || |||||||||||
Sbjct 22970 CCAGTAAGGGTCTTAACGAAAATTTGCAT 22998
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || ||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 28656 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 28715
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | || ||| |||| || ||||| |||||| || || || || |||||
Sbjct 28716 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 28775
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || |||||||||||
Sbjct 28776 CCAGTAAGGGTCTTAACGAAAATTTGCAT 28804
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| || ||||| || |||||| ||||||||||| ||| |||||
Sbjct 29299 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 29358
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| |||| || ||||| || || || | ||||| ||||| |||||||
Sbjct 29359 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 29418
Query 15344 GTTTTTACAAAAATTTGCAT 15363
||||| ||||| || |||||
Sbjct 29419 GTTTTCACAAATATCTGCAT 29438
>seq2483
Length=432
Score = 93.3 bits (102), Expect = 3e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || ||||| | |||||||||||||| || ||||||||| ||||| || |
Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | || ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || |||||||||||
Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCAT 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362156061502722
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