Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq365 82.4 7e-11 seq241 82.4 7e-11 >seq365 Length=37953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || |||||| ||||||| | ||||| ||| | Sbjct 29438 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 29379 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| |||||| |||||||||||||| || || |||||| Sbjct 29378 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 29319 Query 24111 CAGAGACTGATTT 24123 ||| | ||||||| Sbjct 29318 CAGCGGCTGATTT 29306 >seq241 Length=74255 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 ||||||||||| ||||| || ||||| | | || ||| || ||||| || | || Sbjct 57600 TTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAG 57659 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 | ||||||| |||||| | | | | || | | |||||||| | |||| ||| Sbjct 57660 GGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCC 57719 Query 133128 ACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGT 133187 | | |||| |||| ||||| || || | ||||| |||| | || |||| || Sbjct 57720 AGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGT 57779 Query 133188 CCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC 133242 | | |||| ||| |||||||| |||||||| || | ||| || || || || || Sbjct 57780 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 57834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429908532732510