Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq386 122 6e-23 seq560 105 4e-18 seq419 105 4e-18 seq1451 102 5e-17 seq797 102 5e-17 seq481 102 5e-17 seq365 91.5 1e-13 seq104 82.4 5e-11 >seq386 Length=35738 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 19844 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 19903 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 19904 TGATCCATTCATACGCGTCACTAATTAGATGACGA 19938 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 26816 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 26875 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 26876 TGATCCATTCATACGCGTCACTAATTAGATGACGA 26910 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 31559 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 31618 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 31619 TGATCCATTCATACGCGTCACTAATTAGATGACG 31652 >seq560 Length=11096 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4827 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 4768 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||| ||| Sbjct 4767 ACGAATATTTAGTCTT 4752 >seq419 Length=26797 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4827 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 4768 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||| ||| Sbjct 4767 ACGAATATTTAGTCTT 4752 >seq1451 Length=846 Score = 102 bits (112), Expect = 5e-17 Identities = 73/84 (87%), Gaps = 5/84 (6%) Strand=Plus/Minus Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCA 25967 ||||||||||||||||||||||||||||||||| | ||||| ||| |||| |||| Sbjct 846 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCA 787 Query 25968 TGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||||||| Sbjct 786 TACGCGTCACTAATTAGATGACGA 763 >seq797 Length=3914 Score = 102 bits (112), Expect = 5e-17 Identities = 73/84 (87%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967 ||||||||||||||||||||||||||||||||| | ||||| ||| |||| |||| Sbjct 1 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCA 60 Query 25968 TGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||||||| Sbjct 61 TACGCGTCACTAATTAGATGACGA 84 >seq481 Length=16737 Score = 102 bits (112), Expect = 5e-17 Identities = 73/84 (87%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967 ||||||||||||||||||||||||||||||||| | ||||| ||| |||| |||| Sbjct 13493 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCA 13552 Query 25968 TGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||||||| Sbjct 13553 TACGCGTCACTAATTAGATGACGA 13576 >seq365 Length=37953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| ||| Sbjct 29440 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 29499 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| |||| |||| || || ||||| || | ||| Sbjct 29500 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 29534 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || ||| ||| ||||| | ||||| ||||| || ||| Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||| ||||||||||| || Sbjct 29748 AGAGTTTTCACAAATATCTGCATTTT 29773 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | || | |||||||||||| ||| || Sbjct 29299 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 29358 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 29359 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 29418 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 29419 GTTTTCACAAATATCTGCAT 29438 >seq104 Length=129113 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| |||| | ||| ||||| | || | |||||| || ||| |||||| Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || || ||| ||||||||||| ||| |||||||| || || Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || ||||||||||||||||| Sbjct 102102 AGTGTCTTCACGAATATCTGCAT 102080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334925801270102