Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq386 122 6e-23
seq560 105 4e-18
seq419 105 4e-18
seq1451 102 5e-17
seq797 102 5e-17
seq481 102 5e-17
seq365 91.5 1e-13
seq104 82.4 5e-11
>seq386
Length=35738
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 19844 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 19903
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 19904 TGATCCATTCATACGCGTCACTAATTAGATGACGA 19938
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 26816 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 26875
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 26876 TGATCCATTCATACGCGTCACTAATTAGATGACGA 26910
Score = 120 bits (132), Expect = 2e-22
Identities = 83/94 (88%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 31559 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 31618
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 31619 TGATCCATTCATACGCGTCACTAATTAGATGACG 31652
>seq560
Length=11096
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4827 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 4768
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 4767 ACGAATATTTAGTCTT 4752
>seq419
Length=26797
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4827 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 4768
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 4767 ACGAATATTTAGTCTT 4752
>seq1451
Length=846
Score = 102 bits (112), Expect = 5e-17
Identities = 73/84 (87%), Gaps = 5/84 (6%)
Strand=Plus/Minus
Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCA 25967
||||||||||||||||||||||||||||||||| | ||||| ||| |||| ||||
Sbjct 846 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCA 787
Query 25968 TGCGCGTCACTAATTAGATGACGA 25991
| ||||||||||||||||||||||
Sbjct 786 TACGCGTCACTAATTAGATGACGA 763
>seq797
Length=3914
Score = 102 bits (112), Expect = 5e-17
Identities = 73/84 (87%), Gaps = 5/84 (6%)
Strand=Plus/Plus
Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967
||||||||||||||||||||||||||||||||| | ||||| ||| |||| ||||
Sbjct 1 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCA 60
Query 25968 TGCGCGTCACTAATTAGATGACGA 25991
| ||||||||||||||||||||||
Sbjct 61 TACGCGTCACTAATTAGATGACGA 84
>seq481
Length=16737
Score = 102 bits (112), Expect = 5e-17
Identities = 73/84 (87%), Gaps = 5/84 (6%)
Strand=Plus/Plus
Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967
||||||||||||||||||||||||||||||||| | ||||| ||| |||| ||||
Sbjct 13493 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCA 13552
Query 25968 TGCGCGTCACTAATTAGATGACGA 25991
| ||||||||||||||||||||||
Sbjct 13553 TACGCGTCACTAATTAGATGACGA 13576
>seq365
Length=37953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 29440 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 29499
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 29500 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 29534
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
| |||||||| ||||||||||| ||
Sbjct 29748 AGAGTTTTCACAAATATCTGCATTTT 29773
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | || | |||||||||||| ||| ||
Sbjct 29299 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 29358
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 29359 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 29418
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 29419 GTTTTCACAAATATCTGCAT 29438
>seq104
Length=129113
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| |||| | ||| ||||| | || | |||||| || ||| ||||||
Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
|| ||||| | || || ||| ||||||||||| ||| |||||||| || ||
Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| || |||||||||||||||||
Sbjct 102102 AGTGTCTTCACGAATATCTGCAT 102080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334925801270102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |