Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq80 89.7 4e-13
seq365 87.8 2e-12
>seq80
Length=140786
Score = 89.7 bits (98), Expect = 4e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||||||||| |||||||| | |||||||| || ||||| | ||||||| ||
Sbjct 78283 AGGGATTCCACCTGATCAACAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 78342
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188
||| || ||||||||||||||| ||||
Sbjct 78343 TACTTTGTCCGATTACAATATTCAGAAAG 78371
>seq365
Length=37953
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 29438 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 29379
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| |||||||| ||
Sbjct 29378 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATTCCACCAGA 29323
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| | |||||||| ||
Sbjct 29322 TCAACAGCGGCTGATTTTTGCTGG 29299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433300316028230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |