Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq68 208 8e-49 >seq68 Length=159368 Score = 208 bits (230), Expect = 8e-49 Identities = 268/365 (73%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || || |||| ||| |||||||| || ||||| || | ||| || || || || Sbjct 129750 TCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTC 129691 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || ||||| || || || || ||||| || || ||||| || ||||| || || Sbjct 129690 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCG 129631 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCG 93292 || | ||||||| |||||| ||| | | || | | |||||| |||||||| || Sbjct 129630 ACCAAACGTTCG-CAAAATG-GCG-ACTGACGGTCACCGATCCAGCGCAAAGCCCAGTCT 129574 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352 ||||||||||| | || || | || ||||| ||||| || || |||| ||||| || Sbjct 129573 GCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCACGCTCCACC 129514 Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 | ||| || ||||| || ||||| || || |||||||| ||||||||||| || || Sbjct 129513 GGATCACGGATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATG 129454 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||| | | || || || | || | |||||| ||||||| | Sbjct 129453 GCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATCGC 129394 Query 93473 TCTAC 93477 || || Sbjct 129393 TCCAC 129389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556824311696080