Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2483 109 1e-18 seq365 105 1e-17 seq104 105 1e-17 seq520 89.7 9e-13 >seq2483 Length=432 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 242 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 183 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 182 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 123 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 122 CCAGTAAGGGTCTTAACGAAAATTTGCATT 93 >seq365 Length=37953 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 17475 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 17476 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 17535 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || |||||| Sbjct 17536 AGTCTTAACGAAAATTTGCATT 17557 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 22850 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 22909 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 22910 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 22969 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 22970 CCAGTAAGGGTCTTAACGAAAATTTGCATT 22999 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | | |||||| || |||||||| ||||| || |||||||| || Sbjct 27817 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTT 27876 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || || || || || | || ||| |||||||| ||||||||||| || || Sbjct 27877 CCCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGT 27936 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||||||||| || || || |||||| Sbjct 27937 GAGGGTCTTAACAAAAATTTGCATT 27961 Score = 104 bits (114), Expect = 4e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 28381 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 28439 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || |||||||||||||||||| ||||| || | Sbjct 28440 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 28499 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| || |||||| Sbjct 28500 TAAGAGTCTTAACGAAAATTTGCATT 28525 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 28656 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 28715 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 28716 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 28775 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 28776 CCAGTAAGGGTCTTAACGAAAATTTGCATT 28805 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| |||||||| || || || |||||| Sbjct 27533 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCC 27591 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || ||| || ||||| ||||||||||| || ||||| Sbjct 27592 TTTTACATTCTCTATTGTATCAGATGGTTCCACCTCCAATGTGATGGTTTTGCCAGTGAG 27651 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||||||| || || |||||| Sbjct 27652 GGTCTTGACAAAAATTTGCATT 27673 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || | | |||||| || |||||||| |||||||| || || || || Sbjct 28099 CTTACCAGCGAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 28158 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || || || || || | || ||| |||||||| |||||||||||||| || Sbjct 28159 CCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTTCCAGT 28218 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || || || |||||| Sbjct 28219 AAGGGTCTTAACAAAAATTTGCATT 28243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 29627 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 29686 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 29687 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 29746 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||| Sbjct 29747 CAGAGTTTTCACAAATATCTGCATT 29771 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||||| || || ||||| || ||||| ||||||||||| | Sbjct 17134 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17193 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| | || || | || ||| |||||||| ||||||||||| || || ||| Sbjct 17194 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17253 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 17254 GTCTTAACAAAAATTTGCATT 17274 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG-ACGGCCTCGATGG 68397 ||| || || |||||||| |||||||| || || || |||||||| || |||| Sbjct 22600 TTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCCTTTTACATTCTCG---- 22654 Query 68398 TGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 | || | || |||||||||||| || || |||||||| || |||||||| ||||| || | Sbjct 22655 TATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGGGTCTTAACGAAAATTT 22714 Query 68458 GCATT 68462 ||||| Sbjct 22715 GCATT 22719 >seq104 Length=129113 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 102222 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 102163 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 102162 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 102103 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 102102 AGTGTCTTCACGAATATCTGCATAAT 102077 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 102646 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 102587 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || |||||||||||| ||||| |||||||| || | Sbjct 102586 TTCACATTTTCAATCGTATCTGATGGTTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 102527 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 102526 GTTTTCACAAAAATCTGCAT 102507 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 102932 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 102873 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || ||||||||||| ||||| |||||||| || | Sbjct 102872 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 102813 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 102812 GTTTTCACAAAAATCTGCAT 102793 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 103218 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 103159 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | || ||||||||||| ||||| |||||||| || | Sbjct 103158 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 103099 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || || || ||||||||| Sbjct 103098 GTTTTCACAAAAATCTGCATT 103078 >seq520 Length=13491 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | | ||||| || |||||||| || || || |||||||| || Sbjct 9747 CTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT-TT 9805 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || || || || || | || |||||||||||| || || |||||||| | Sbjct 9806 TGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAG 9865 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || || || |||||| Sbjct 9866 TAAGAGTCTTAACAAAAATTTGCATT 9891 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | | ||||| || |||||||| || || || |||||||| || Sbjct 10597 CTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT-TT 10655 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || || || || || | || |||||||||||| || || |||||||| | Sbjct 10656 TGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAG 10715 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || || || |||||| Sbjct 10716 TAAGAGTCTTAACAAAAATTTGCATT 10741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921562010692240