Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq365 102 2e-16 seq342 89.7 1e-12 >seq365 Length=37953 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 17537 GTCTTAACGAAAATTTGCATT 17557 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 29748 AGAGTTTTCACAAATATCTGCATT 29771 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||| ||| |||||| ||| |||||||||||||| || |||||| Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| |||||||| | ||| | ||| ||||| | ||||| || || || || Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 27938 AGGGTCTTAACAAAAATTTGCATT 27961 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || |||||||||||||| |||| || ||||| || ||||| || || ||| Sbjct 17134 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 17190 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| || || | || ||| | ||| ||||| | |||||| || ||||| || Sbjct 17191 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTT 17250 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 17251 AGGGTCTTAACAAAAATTTGCATT 17274 >seq342 Length=44543 Score = 89.7 bits (98), Expect = 1e-12 Identities = 193/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 ||||| || || ||| | ||| ||||||||||||||| || || ||| || || Sbjct 9780 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 9721 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | || | ||||| | |||| ||||||| |||||||| || ||| || ||| Sbjct 9720 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 9661 Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTG 325544 ||| |||| | ||| || || ||||| || |||| | |||||||||||| || Sbjct 9660 ACGGAACCAGCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATG 9603 Query 325545 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 325604 | | ||||| ||||| ||| || || |||||||| | ||| || ||||| || | Sbjct 9602 TGAACAAAACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGTATGCTACGCT 9543 Query 325605 CCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647 | || | | || ||||||||| | || ||||||||||| Sbjct 9542 CGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 9500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179575170724076