Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq365 102 2e-16
seq342 89.7 1e-12
>seq365
Length=37953
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 17417 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17476
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 17477 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17536
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||
Sbjct 17537 GTCTTAACGAAAATTTGCATT 17557
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 29628 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 29687
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 29688 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 29747
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 29748 AGAGTTTTCACAAATATCTGCATT 29771
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||| ||| |||||| ||| |||||||||||||| || ||||||
Sbjct 27818 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTC 27877
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| |||||||| | ||| | ||| ||||| | ||||| || || || ||
Sbjct 27878 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTG 27937
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || || || ||||||
Sbjct 27938 AGGGTCTTAACAAAAATTTGCATT 27961
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || |||||||||||||| |||| || ||||| || ||||| || || |||
Sbjct 17134 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 17190
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| || || | || ||| | ||| ||||| | |||||| || ||||| ||
Sbjct 17191 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTT 17250
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || || || ||||||
Sbjct 17251 AGGGTCTTAACAAAAATTTGCATT 17274
>seq342
Length=44543
Score = 89.7 bits (98), Expect = 1e-12
Identities = 193/284 (68%), Gaps = 6/284 (2%)
Strand=Plus/Minus
Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426
||||| || || ||| | ||| ||||||||||||||| || || ||| || ||
Sbjct 9780 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 9721
Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486
| || | ||||| | |||| ||||||| |||||||| || ||| || |||
Sbjct 9720 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 9661
Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTG 325544
||| |||| | ||| || || ||||| || |||| | |||||||||||| ||
Sbjct 9660 ACGGAACCAGCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATG 9603
Query 325545 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 325604
| | ||||| ||||| ||| || || |||||||| | ||| || ||||| || |
Sbjct 9602 TGAACAAAACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGTATGCTACGCT 9543
Query 325605 CCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647
| || | | || ||||||||| | || |||||||||||
Sbjct 9542 CGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 9500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179575170724076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |