Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq24 102 9e-17 seq316 98.7 1e-15 seq82 96.9 4e-15 seq123 95.1 1e-14 >seq24 Length=220534 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 || |||| |||||| |||| | |||||||||| |||| |||||||||||||||| || Sbjct 119464 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 119523 Query 57056 ACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||||| Sbjct 119524 ACTCACCACTATACTACCGAGGAT 119547 >seq316 Length=52316 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 56980 AACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCG 57039 || || |||| | ||| || ||| |||| |||| | |||||||||| |||| |||| Sbjct 35449 AAAAATTTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCG 35508 Query 57040 CGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||| ||||||||||||||||||||||||| Sbjct 35509 CGTGACAGGCGGGAATACTCACCACTATACTACCGAGGA 35547 >seq82 Length=138979 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 70896 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 70955 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 70956 TACTACCGAGGAT 70968 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 71593 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71652 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 71653 TACTACCGAGGAT 71665 >seq123 Length=120185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 45262 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 45321 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 45322 TACTACCGAGGA 45333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543177205981280