Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq24 102 9e-17
seq316 98.7 1e-15
seq82 96.9 4e-15
seq123 95.1 1e-14
>seq24
Length=220534
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 119464 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 119523
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||
Sbjct 119524 ACTCACCACTATACTACCGAGGAT 119547
>seq316
Length=52316
Score = 98.7 bits (108), Expect = 1e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 56980 AACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCG 57039
|| || |||| | ||| || ||| |||| |||| | |||||||||| |||| ||||
Sbjct 35449 AAAAATTTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCG 35508
Query 57040 CGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||||| |||||||||||||||||||||||||
Sbjct 35509 CGTGACAGGCGGGAATACTCACCACTATACTACCGAGGA 35547
>seq82
Length=138979
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 70896 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 70955
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 70956 TACTACCGAGGAT 70968
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 71593 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71652
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 71653 TACTACCGAGGAT 71665
>seq123
Length=120185
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 45262 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 45321
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 45322 TACTACCGAGGA 45333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543177205981280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |